RNA id: TU868825


Basic Information

Item Value
RNA id TU868825
length 633
lncRNA type intronic
GC content 0.36
exon number 2
gene id G763747
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 2552840 ~ 2574497 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aagtgaaacatacttccttagttgttaattttctagaaatctaaaggcacaacccaGATCtccagtagtggaacatgttattactacactagattagagacaatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattagtCTACTAGATTAGAGataatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatggtattactccactagattagagacaatATCtccagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattactccactagattagagacaatgtcttcagtagtggaacatgttattactccaacctggattagagacaatgtcttcagtagtggaacatgttattactccactcgattagagacaatgtcttcagta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU868821 lncRNA downstream 9661 2542868 ~ 2543179 (-) True G763743
TU868820 lncRNA downstream 10871 2541479 ~ 2541969 (-) True G763742
TU868819 lncRNA downstream 14320 2538297 ~ 2538520 (-) True G763741
TU868818 lncRNA downstream 14818 2537789 ~ 2538022 (-) True G763740
TU868803 lncRNA downstream 55954 2496588 ~ 2496886 (-) True G763727
TU868861 lncRNA upstream 62940 2637437 ~ 2678012 (-) False G763773
TU868857 lncRNA upstream 63550 2638047 ~ 2678012 (-) False G763773
TU868859 lncRNA upstream 63550 2638047 ~ 2643652 (-) False G763773
TU868860 lncRNA upstream 63550 2638047 ~ 2658825 (-) False G763773
TU868864 lncRNA upstream 63550 2638047 ~ 2658825 (-) False G763773
NM_001165147.1 mRNA downstream 183363 2357311 ~ 2369477 (-) True mog
XM_036987012.1 mRNA downstream 198527 2212274 ~ 2354313 (-) False LOC110535267
XM_036987037.1 mRNA upstream 37970 2612467 ~ 2680635 (-) False LOC110519362
XM_036987039.1 mRNA upstream 37970 2612467 ~ 2680635 (-) False LOC110519362
XM_036987038.1 mRNA upstream 37971 2612468 ~ 2680635 (-) True LOC110519362
XM_036987040.1 mRNA upstream 152968 2727465 ~ 2788437 (-) True LOC110518027
XM_036987044.1 mRNA upstream 238898 2813395 ~ 2824097 (-) False LOC110531328
TU868794 other downstream 65939 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 65939 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 574609 1962973 ~ 1978231 (-) False G763587
TU867065 other downstream 1686408 861374 ~ 866432 (-) False G762459
TU869128 other upstream 721805 3296302 ~ 3299103 (-) True G763961
TU869858 other upstream 1277474 3851971 ~ 3858893 (-) False LOC110498423
TU870731 other upstream 1439337 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 1439337 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 1716298 4290795 ~ 4319826 (-) True G765059

Expression Profile