RNA id: TU869678



Basic Information


Item Value
RNA id TU869678
length 230
lncRNA type intronic
GC content 0.41
exon number 1
gene id G764310
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3449997 ~ 3450226 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


cgccatccaaagtgtaattaataacttcaccatgatcaaagggatattcaatgtctgcctaccaataggtgcccttcttcacGAGGcagtggaaaacctccctggtctttgtggttgaatctgtgtttgaaattccctgctctactgagggacctttacagataattgtatgtgtggggggtacagagatgaggatgTCATTAATaacatcatgttaaacactattattg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU869676 lncRNA downstream 1589 3448163 ~ 3448408 (-) True G764308
TU869656 lncRNA downstream 23841 3425138 ~ 3426156 (-) True G764290
TU869641 lncRNA downstream 60774 3388299 ~ 3389223 (-) True G764276
TU869633 lncRNA downstream 62196 3382152 ~ 3387801 (-) False G764273
TU869679 lncRNA upstream 428 3450654 ~ 3450923 (-) True G764311
TU869691 lncRNA upstream 17304 3467530 ~ 3471850 (-) True G764323
TU869699 lncRNA upstream 27387 3477613 ~ 3481963 (-) False G764327
TU869700 lncRNA upstream 30392 3480618 ~ 3482868 (-) False G764327
TU869702 lncRNA upstream 30392 3480618 ~ 3482868 (-) True G764327
XM_036987078.1 mRNA downstream 41931 3354249 ~ 3408066 (-) True LOC110518889
XM_036987076.1 mRNA downstream 41932 3349101 ~ 3408065 (-) False LOC110518889
XM_036987077.1 mRNA downstream 41941 3345683 ~ 3408056 (-) False LOC110518889
XM_036987075.1 mRNA downstream 112248 3302117 ~ 3337749 (-) False rnf150b
XM_036987071.1 mRNA downstream 184368 3260377 ~ 3265629 (-) True si:ch211-149b19.2
XM_036987079.1 mRNA upstream 34642 3484868 ~ 3493772 (-) True LOC110532886
XM_036987081.1 mRNA upstream 49395 3499621 ~ 3510559 (-) False anapc10
XM_036987080.1 mRNA upstream 49398 3499624 ~ 3510227 (-) True anapc10
XM_036987082.1 mRNA upstream 68485 3518711 ~ 3562700 (-) False otud4
XM_036987086.1 mRNA upstream 136923 3587149 ~ 3610560 (-) True LOC110531324
TU869128 other downstream 150894 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 963096 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 963096 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1471766 1962973 ~ 1978231 (-) False G763587
TU867066 other downstream 2584885 861374 ~ 865112 (-) False G762459
TU869858 other upstream 401745 3851971 ~ 3858893 (-) False LOC110498423
TU870731 other upstream 563608 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 563608 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 840569 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 996101 4446327 ~ 4536079 (-) False G765100

Expression Profile