RNA id: TU869963


Basic Information

Item Value
RNA id TU869963
length 326
lncRNA type intronic
GC content 0.52
exon number 3
gene id G764491
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 3919371 ~ 3920707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gctgtacagaaacccagcctaaaaccacaaagagcaagcaatgcaggtgtagaagcacggtggctaggaaaaactccctagaaaggccaaaacctaggaagaaacctagagaggaaccaggctatgtggggacAGCCACAGCAGACAACAAACtaggtagccacagcagtcaactagctaggtagccacagcagtccaactagctagctagccacagcagtccaactagctaggtagccacagcagtccaactagctagctagccacagcagtccaactagctagctagccacagcagtccaactagctagctagccacagcagtc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU869960 lncRNA downstream 2344 3916754 ~ 3917027 (-) True LOC110498424
TU869951 lncRNA downstream 15510 3903081 ~ 3903861 (-) False LOC110498424
TU869952 lncRNA downstream 15510 3903540 ~ 3903861 (-) False LOC110498424
TU869860 lncRNA downstream 19081 3878156 ~ 3900290 (-) True LOC110498423
TU869954 lncRNA downstream 41330 3877698 ~ 3878041 (-) True G764483
TU869966 lncRNA upstream 1098 3921805 ~ 3922053 (-) True G764493
TU869969 lncRNA upstream 13763 3934470 ~ 3934808 (-) True G764496
TU869970 lncRNA upstream 17208 3937915 ~ 3938120 (-) True G764497
TU870688 lncRNA upstream 27124 3947831 ~ 3949503 (-) True LOC110513230
TU870707 lncRNA upstream 71025 3991732 ~ 3994954 (-) True G764962
XM_036987103.1 mRNA downstream 2315 3903121 ~ 3917056 (-) False LOC110498424
XM_036987097.1 mRNA downstream 17822 3851852 ~ 3901549 (-) False LOC110498423
XM_036987098.1 mRNA downstream 17822 3851852 ~ 3901549 (-) False LOC110498423
XM_036987099.1 mRNA downstream 35051 3851852 ~ 3884320 (-) False LOC110498423
XR_005053096.1 mRNA downstream 79491 3793492 ~ 3839880 (-) False LOC110532885
XM_036987104.1 mRNA upstream 28361 3949068 ~ 3967323 (-) False LOC110513230
XR_005053099.1 mRNA upstream 28361 3949068 ~ 3967323 (-) False LOC110513230
XR_005053100.1 mRNA upstream 28361 3949068 ~ 3967323 (-) False LOC110513230
XR_005053101.1 mRNA upstream 28361 3949068 ~ 3967323 (-) False LOC110513230
XR_005053102.1 mRNA upstream 28361 3949068 ~ 3967323 (-) False LOC110513230
TU869858 other downstream 60478 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 620268 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1432470 2473098 ~ 2486901 (-) False G763719
TU868793 other downstream 1432470 2475074 ~ 2486901 (-) True G763719
TU868630 other downstream 1941140 1962973 ~ 1978231 (-) False G763587
TU870731 other upstream 93127 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other upstream 93127 4013834 ~ 4016409 (-) True LOC118966151
TU870833 other upstream 370088 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 525620 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 545860 4466567 ~ 4467708 (-) True G765100

Expression Profile