RNA id: TU870717


Basic Information

Item Value
RNA id TU870717
length 581
lncRNA type intronic
GC content 0.36
exon number 2
gene id G764966
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4047716 ~ 4049499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactatatatagtaacactgctgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgctgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactatcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870712 lncRNA downstream 49323 3993267 ~ 3998393 (-) True G764964
TU870707 lncRNA downstream 52762 3991732 ~ 3994954 (-) True G764962
TU870688 lncRNA downstream 98213 3947831 ~ 3949503 (-) True LOC110513230
TU869970 lncRNA downstream 109596 3937915 ~ 3938120 (-) True G764497
TU869969 lncRNA downstream 112908 3934470 ~ 3934808 (-) True G764496
TU870716 lncRNA upstream 5570 4055069 ~ 4063234 (-) True G764965
TU870766 lncRNA upstream 37659 4087158 ~ 4088270 (-) True G765004
TU870774 lncRNA upstream 93992 4143491 ~ 4143848 (-) True G765011
TU870776 lncRNA upstream 100952 4150451 ~ 4154911 (-) True G765013
TU870778 lncRNA upstream 109195 4158694 ~ 4161457 (-) True G765014
XM_036989232.1 mRNA downstream 14179 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 80388 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 80388 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 80390 3949068 ~ 3967326 (-) False LOC110513230
XM_036987105.1 mRNA downstream 80391 3949068 ~ 3967325 (-) False LOC110513230
XM_036987124.1 mRNA upstream 293995 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 293995 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 293995 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 293995 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 304821 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 31307 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 31307 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 188823 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 748613 3296302 ~ 3299103 (-) True G763961
TU868794 other downstream 1560815 2473098 ~ 2486901 (-) False G763719
TU870833 other upstream 241296 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 396828 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 417068 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 525346 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 1005981 5055480 ~ 5057322 (-) True G765347

Expression Profile