RNA id: TU870716


Basic Information

Item Value
RNA id TU870716
length 1103
lncRNA type intronic
GC content 0.37
exon number 3
gene id G764965
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4055069 ~ 4063234 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactactgtcctacaactagagactctatatagtaacactgtcctacaactagagactatATACtaacactgccctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgctgccctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagagactctatatagtaacactgccctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgctgtcctacaactagagactctatatagtaacactgctgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgctgtcctacaactagagactatatagtaacactactgtcctacaactagagactctatatagtaacactgctgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactatcctacaactagagactctatatagtaacactgtcctacaactagagactctatatagtaacactgtcctacaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870717 lncRNA downstream 5570 4047716 ~ 4049499 (-) True G764966
TU870712 lncRNA downstream 56676 3993267 ~ 3998393 (-) True G764964
TU870707 lncRNA downstream 60115 3991732 ~ 3994954 (-) True G764962
TU870688 lncRNA downstream 105566 3947831 ~ 3949503 (-) True LOC110513230
TU869970 lncRNA downstream 116949 3937915 ~ 3938120 (-) True G764497
TU870766 lncRNA upstream 23924 4087158 ~ 4088270 (-) True G765004
TU870774 lncRNA upstream 80257 4143491 ~ 4143848 (-) True G765011
TU870776 lncRNA upstream 87217 4150451 ~ 4154911 (-) True G765013
TU870778 lncRNA upstream 95460 4158694 ~ 4161457 (-) True G765014
TU870790 lncRNA upstream 128862 4192096 ~ 4193033 (-) True G765021
XM_036989232.1 mRNA downstream 21532 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 87741 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 87741 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 87743 3949068 ~ 3967326 (-) False LOC110513230
XM_036987106.1 mRNA downstream 87744 3949068 ~ 3967325 (-) False LOC110513230
XM_036987124.1 mRNA upstream 280260 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 280260 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 280260 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 280260 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 291086 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 38660 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 38660 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 196176 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 755966 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1568168 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 227561 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 383093 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 403333 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 511611 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 992246 5055480 ~ 5057322 (-) True G765347

Expression Profile