RNA id: TU870774



Basic Information


Item Value
RNA id TU870774
length 282
lncRNA type intronic
GC content 0.49
exon number 2
gene id G765011
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4143491 ~ 4143848 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tgtctgtatctgtagctgTGTCTGTTTCTGTATATGTAGCTGTAGCTGTATCTGTagctgtatctgtacctgtagcTATATCTGTAGCTGTAGCTatacctgtatctgtatctctgtctgtacctgtatctgtatctgtagctaTAGCTGTCCCTGGCTCTCACCCcaacctctctctgtgtttccccTGACCACCagctgtacctgtaGCTATAGCTGTCCCTGGCTCTCACCCCAACCTCTCTCCGTGTTTCCCCTGACCACCAGCTGTACCTGTAGCTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU870766 lncRNA downstream 55221 4087158 ~ 4088270 (-) True G765004
TU870716 lncRNA downstream 80257 4055069 ~ 4063234 (-) True G764965
TU870718 lncRNA downstream 86695 4048608 ~ 4056796 (-) True G764967
TU870717 lncRNA downstream 93992 4047716 ~ 4049499 (-) True G764966
TU870712 lncRNA downstream 145098 3993267 ~ 3998393 (-) True G764964
TU870776 lncRNA upstream 6603 4150451 ~ 4154911 (-) True G765013
TU870778 lncRNA upstream 14846 4158694 ~ 4161457 (-) True G765014
TU870790 lncRNA upstream 48248 4192096 ~ 4193033 (-) True G765021
TU870757 lncRNA upstream 62291 4206139 ~ 4207825 (-) False G764997
TU870758 lncRNA upstream 62291 4206139 ~ 4207825 (-) False G764997
XM_036989232.1 mRNA downstream 109954 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 176163 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 176163 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 176165 3949068 ~ 3967326 (-) False LOC110513230
XM_036987106.1 mRNA downstream 176166 3949068 ~ 3967325 (-) False LOC110513230
XM_036987124.1 mRNA upstream 199646 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 199646 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 199646 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 199646 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 210472 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 127082 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 127082 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 284598 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 844388 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1656590 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 146947 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 302479 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 322719 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 430997 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 911632 5055480 ~ 5057322 (-) True G765347

Expression Profile