RNA id: TU870776


Basic Information

Item Value
RNA id TU870776
length 4405
lncRNA type intronic
GC content 0.39
exon number 2
gene id G765013
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4150451 ~ 4154911 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATCCCTCTAGTAAACATGACAGTTGGtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttgttctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacatttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaaaccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgtcactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttactgtgttttataaagccctgtttatccctctagtaaacatgacagttggtctgttctgttactgtgttttataaAGCCCTGTTTATCCCTCTACTGTTTGGCTCACCcaagtgtctgtgtctgtgtctctgttacTGTTTGGCTCACCcaagtgtctgtgtgtttttgtctctgtTACTGTTTGGCTCAcccaagtgtctgtgtgtgtgtctctgttactGTTTGGCTCAcccaagtgtctgtgtgtgtctctgttactGTTTGGCTCACccaagtgtctgtctgtgtctcttacCGTTTGGCTCACccaagtgtctgtctgtgtctctgttacCGTTTGGCTCACccaagtgtctgtctgtgtctctgttacTGTTTGGCTCAcccaagtgtctgtgtgtgtgtctctgtt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870774 lncRNA downstream 6603 4143491 ~ 4143848 (-) True G765011
TU870766 lncRNA downstream 62181 4087158 ~ 4088270 (-) True G765004
TU870716 lncRNA downstream 87217 4055069 ~ 4063234 (-) True G764965
TU870718 lncRNA downstream 93655 4048608 ~ 4056796 (-) True G764967
TU870717 lncRNA downstream 100952 4047716 ~ 4049499 (-) True G764966
TU870778 lncRNA upstream 3783 4158694 ~ 4161457 (-) True G765014
TU870790 lncRNA upstream 37185 4192096 ~ 4193033 (-) True G765021
TU870757 lncRNA upstream 51228 4206139 ~ 4207825 (-) False G764997
TU870758 lncRNA upstream 51228 4206139 ~ 4207825 (-) False G764997
TU870759 lncRNA upstream 51228 4206139 ~ 4207825 (-) True G764997
XM_036989232.1 mRNA downstream 116914 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 183123 3949068 ~ 3967328 (-) False LOC110513230
XM_036987112.1 mRNA downstream 183123 3949068 ~ 3967328 (-) False LOC110513230
XM_036987110.1 mRNA downstream 183125 3949068 ~ 3967326 (-) False LOC110513230
XM_036987106.1 mRNA downstream 183126 3949068 ~ 3967325 (-) False LOC110513230
XM_036987124.1 mRNA upstream 188583 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 188583 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 188583 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 188583 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 199409 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 134042 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 134042 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 291558 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 851348 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1663550 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 135884 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 291416 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 311656 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 419934 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 900569 5055480 ~ 5057322 (-) True G765347

Expression Profile