RNA id: TU870790


Basic Information

Item Value
RNA id TU870790
length 800
lncRNA type antisense_over
GC content 0.56
exon number 2
gene id G765021
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4192096 ~ 4193033 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGATCTCTGTGACAGTATCGGTCTCCTTCACTTCGTGCCCTTTCACTGCTACCCCAGCCTCCTCCTTCACTGCTACCCCAGCCTCCTCCTCTTCGTTCCCCTTCACTGCTACCCCAGCCTCCTCCTCTTCGTTCCCCTTCACTGCTAACCCAGCCTCCTCCTCTTCGTTCCCCTTCACTGCTAACCCAGCCTCCTCCTCTTCGTTCCCCTTCACTGCTAACCCAGCCTCCTCCTTTTCGTTCCCCTTCACTGCTAacccagcctcctcctcctcgttcccCTTCACTGCTAacccagcctcctcctcctcgttcccCTTCACTGCTAacccagcctcctcctcctcgttcccCTTCACTGGTAccccagcctcctcctcctcgttcccCTTCACTGGTAccccagcctcctcctcctcctcgttcccCTTCACTGGtaccccaccctcctcctcctcgttcccCTTCACTGCTACCCCAGCCTCCTCCTCTTCGTTCCCCTTCACTGGtaccccaccctcctcctcttcgttCCCCTTCACTGGTAccccaccctcctcttcctcctcttcgtccCCCTTAACCTCTTCCTTGTGGATtacttgtttgtctgtttctaaaCTTTCCACCTTCCTCATCTTACTGACTTCAATCTTTCCCTCTTCAACACCAACTTCCTTTATCTTCTCTCCCTCATCctttttcctcttcctccctctactctcctcctgtttctttctctcttctgtgGTCTTCTCGCTCTTTGGAGTGGACGAGCTTTTCTCCTCCGTCAATCTCGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870778 lncRNA downstream 30639 4158694 ~ 4161457 (-) True G765014
TU870776 lncRNA downstream 37185 4150451 ~ 4154911 (-) True G765013
TU870774 lncRNA downstream 48248 4143491 ~ 4143848 (-) True G765011
TU870766 lncRNA downstream 103826 4087158 ~ 4088270 (-) True G765004
TU870716 lncRNA downstream 128862 4055069 ~ 4063234 (-) True G764965
TU870757 lncRNA upstream 13106 4206139 ~ 4207825 (-) False G764997
TU870758 lncRNA upstream 13106 4206139 ~ 4207825 (-) False G764997
TU870759 lncRNA upstream 13106 4206139 ~ 4207825 (-) True G764997
TU870797 lncRNA upstream 15597 4208630 ~ 4208976 (-) True G765028
TU870805 lncRNA upstream 19692 4212725 ~ 4213321 (-) True G765032
XM_036987116.1 mRNA downstream 8584 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA downstream 8584 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA downstream 8584 4043130 ~ 4183512 (-) True LOC110531315
XM_036989232.1 mRNA downstream 158559 4012152 ~ 4033537 (-) False LOC118966151
XM_036987111.1 mRNA downstream 224768 3949068 ~ 3967328 (-) False LOC110513230
XM_036987124.1 mRNA upstream 150461 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 150461 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 150461 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 150461 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 161287 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 175687 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 175687 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 333203 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 892993 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1705195 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 97762 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 253294 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 273534 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 381812 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 862447 5055480 ~ 5057322 (-) True G765347

Expression Profile