RNA id: TU870759


Basic Information

Item Value
RNA id TU870759
length 1633
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id G764997
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4206139 ~ 4207825 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGGGTTTATTGACCGACTGTGTAACCTGAACTAATGCTCATTTATTGCGTGACAGAACGGCTTTATTGACCAACAGTGTAAACTGAATTAAtactaacattttttttttttttaccagtgaAAATGACAACTGTAAAACACATCTAAAAAGGTCAAGTGTAACACAAATCTACTCCACAGTGTCAAAAACCAAAGTGTGTTCCCCTTTAAAACCATTTCACAGAACAGTACCAAcgcctgtctgtgtctctgcctgtctgtgtctctgcctgtctgtgtctctgcctgtctgtgtctctgcctgtctgtgtctctgtgtgtgtatgaaaaCAAGGGTCACTGCAGTTGAATAAGAGGTTCAAATATAATGCCGTCTGTCCCAGGTTCAAATATAATGCCGTCTGTCCTGAATCAGATGACCAGCCAGACTCTTAACTTGTGTGCTACTGTCTGGCcctgagggtggggggggggggggggggttacaacCATGAGCAGTGATGGCTATTGAAGGAGATACCCTGAAGGGTAATATTACCAGGCAACCAGACCTGCTTTAGGCAACTAGCCATCTGGCCTAAAGCAATAACCAACTTGGCTACTTACTGCAGGAGTACAAGCTCAGTAAGAATCCAGGCGAAGTAGAACGTCGTCTATACAACACCGTTAAAAACTATACAAACCACACTAAGTATAGTATTTAAGAGAACATACAAAGGtggatatataaaaaaataaacatcaggAGAGTAAAAACGTGTGTAGACTGAACTGTTCCCTGGTTTCTACATCCTATAAGTAGggcttcttctctcctctcagcctcagggaaaggaggagacatAACACACTCCCCAGGTGAGTCTGTCTTTAGGAAAACACCCGAGCCCTATTCACTAGAAGACCTAAACaccctgaatttgtccaataaaaaataaaaattgaaaataataaaaacactCGTTGTCcttttccattgcaaaacgtcCAATGAATATGGGTGAGGAGGTTGTCCAAATACTCTGATTGGACAAGAGAGGGTTAAGAAACATCATAACCCCAGTTGGACAGCTGGTATGTTCCGTGTTCACCCCCTCTGATTCTGAGTTGGTATGTTCCATTGTTCTGTATGTTCCATTGTTCTGTATGTTCCATTGTTCTGTCACACATCTAGAATCAGTTTCCCTCCCCAAATACTAACCTTCAACCATTAGTGGTCGAAAATTGTAACCTGCACCAAGATCAgagtctaggggcaacttcaccctgcTCCGTTTCTCACAGTGGAGCTCAGGATGAGGCTATTGGAGTTCGGAGCTCCCACCCTCTGGCACCTCCTCTGGcacctcctcttccttcttctcaGTCACgatccccttctctcctcccctcctctcctccagttgACTCATTCTCCTGCGAACCTCCTGcagaacctctcctctcctcttctgtttctccctccatctctccaccctctcctcctcctccctctctttctcctccaggaGCGAGCGGAGGAACTCGGGGCTGATGACGTTATCCTTGTCGCTAACCAATAGGAATGCATTCTTGAAGCGGTTGTAGAGCATCGATGCCTTGTCCATCACGTCCTGGTTACTGCGGAAACGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870790 lncRNA downstream 13106 4192096 ~ 4193033 (-) True G765021
TU870778 lncRNA downstream 44682 4158694 ~ 4161457 (-) True G765014
TU870776 lncRNA downstream 51228 4150451 ~ 4154911 (-) True G765013
TU870774 lncRNA downstream 62291 4143491 ~ 4143848 (-) True G765011
TU870766 lncRNA downstream 117869 4087158 ~ 4088270 (-) True G765004
TU870797 lncRNA upstream 805 4208630 ~ 4208976 (-) True G765028
TU870805 lncRNA upstream 4900 4212725 ~ 4213321 (-) True G765032
TU870810 lncRNA upstream 15050 4222875 ~ 4223294 (-) True G765037
TU870820 lncRNA upstream 27466 4235291 ~ 4235559 (-) True G765047
TU870824 lncRNA upstream 38121 4245946 ~ 4246168 (-) True G765051
XM_036987116.1 mRNA downstream 22627 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA downstream 22627 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA downstream 22627 4043130 ~ 4183512 (-) True LOC110531315
XM_036989232.1 mRNA downstream 172602 4012152 ~ 4033537 (-) False LOC118966151
XM_036987112.1 mRNA downstream 238811 3949068 ~ 3967328 (-) False LOC110513230
XM_036987124.1 mRNA upstream 135669 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 135669 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 135669 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 135669 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 146495 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 189730 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 189730 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 347246 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 907036 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1719238 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 82970 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 238502 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 258742 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 367020 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 847655 5055480 ~ 5057322 (-) True G765347

Expression Profile