RNA id: TU870832


Basic Information

Item Value
RNA id TU870832
length 3931
lncRNA type antisense_over
GC content 0.43
exon number 5
gene id G765058
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4258960 ~ 4264239 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTAACTAACAGAAATATAGTCTGACAAAACATCTCCACTGCTTTCCTTGAAGTGCTGTTCTATACACCATGTCAGACCTCTAGAAACTCTCTCTATTTGGACAGTGAACCTACACTGACCCCaaaatatataaacacaacatgtaaagtgttggtcccatgtttcatgagctgaaataaaagatcacaatatatattttccatatgtacaaaaagcttatttctctcatattttgtgcacaaatttgtttatatctgAAATAGCTGAAATAAAATCTCAGAACTGTTCCATGAGCACAATTATTTTTTCTTCCTCtccaatgttgtgcacaaatgtgtttacatccctgttagtaagcgaTTCTCCTTTgtgaagataatccatccacctgacaggtgtggcataatcaagaagctgattaaacagcatgatcattacacaggtgcaccttgtgctgggggcaataaaaggccactctaaaatgtgacaacacaatgccacagatgtctcaagttgagggagcctgcaattggcatgctgactgcaggaatatccaccagagctgttgccagagaatttaatgttaatttctctaccatatagccgtcgttttagagaacttgtcagtacgtccaaccggcctcacaaccgcagaccacgtgtaaccacgacaacccaggacctccacatccggcttcttcgcctgtgggatcatctgagaccagccatccggacagctgatgaaacggtGGGTTTTCACAACTGAAGAATTTATGCGCAAACTGTTTGAAtcaagtttgcggacgacactagtggtaggcttgattaccaacaacgacgagacggcctacagagaggaggtgagggccctcggagtgtggtgtcaggaaaataacctcacactcaacgtcaacaaaaataAGGAGATgaacgtggacttcaggaaacagcagagggaacacccccctatccacatcaatggaacagtagtggagagggtagtaagttaagttcctcggcgtacacatcacggacaaactgaattggtccactcacacagacagcatcgtgaagaaggcgcagcatcgcttcttcaacctcaggaggctgaagaaattcagcttatCACCGAAAACACTTACAAACTtctagatgcacaatcgagagcatcctgttgggctgtatcatcgcctggtacggcaactgcaccgccctcaaccgtaaggctctccagagggtggtgaggtctacacaacgcatcaccgggggcaaactacctgccctccaggacacctacaccacccgatgtcacaggaaggccataaagatcatcaaggacaacaaccacctgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggggcattaaagctgggaccgagagactgaaaaacagcttctatctcaaggccatcagactgttaaacagccaccactaacattgagtggctgctgccaacatactgactcaactccagccactttaataatgtaaaaatTGAATgagaaaatgtatcactagccactttaaacaatgccactttatataatgtttacataccccacattactcatctcatatgtatatactgtcctcgataccatctactgtatcttgcctatgccgttctgtaccatcactcatccatatatctttatgtacatattcttcattcctttacacttgtgtctataaggtagtagttttggaattgttagttagattactcgttggttattactgcattgtcggaactagaagcacaagcatttcactacacacgcattaacatctgctaaccatgtgtatgtgatcaataacatctgttaaccatgtgaccattaacatctgctaaccatgtgtatgtgatcaataacatctgctaaccatgtgtatgtgatcaataacatctgttaaccatgtgtatgtgatcaataacatatGATTTGATTTATACTCCAGCTTTTTGGATTTGTGATCAAATGTTTACTTGTATTTCAGTTAATTTTATGTCCAACAgcaatgaatggtaaataatgtattgtgtcattttagaGTCACTTTTATAGTAAATaataatagaatatgtttctaaacacttctacattcatgtggatgttACAGATAACCATGAATAAATGCTAATCTGTCACCATTACCAGTAACAAGGGAGGATAGCATTTTTGCTAATCTCTCACCATtatcaataacaggggaggttagcatttttgctaatctctcaccattactaataacaggggaggttagcatttttgctaatctctcaccattactaataacaggggaggttagcatttttttgggggggggtggggggggttgtaCTATATTTaaactcatcattattcatccattaatttctattgggcacatcATAATACaaaacacaatcaaaacaaacggcaaatgcatccaacaagtttgtagtcacACAAGCTTAGTGGTCAatgtgtgctatgaatatggtACCAAAAATACTAAAcctttgacaaaaaaaatgttatgAACTATAAGTGAATTTATCCAAACAGCCTACTTATCAAACCTTCAAATAGGGATACTAGATACATGAAGCGCATTTCATTTCTGAACGGTAACAACAGacatgtatgaaaataccctcaaataaaaaggGGGCCATTCTGTCACCTCATAAAAACCTCTTGGCTCTCAAATCCAAAACGCTGGAGTATTACGGCGAATTCaacgttttagcttcactgtccaaataaatacgtaaGGGGAGAGTGTACATCCTTCATACACGTGCGTACATAGTCATTATTACCAGACAATATTGTATGTTTTCCATACTatatacagaacacacacacactttcattagTACTCGATATTGTGACCAATTGGAAAAACTGTTtaaaagaggacattgtattattTCTTTGTACTCCccgacgaaggccatgcagccgaaacgtgTCGGATTTTTAAAACTGTAGTTTTGGTGTAAAATCGGTTGTAGTCTGATTGTAGTTGGGCTGTAGTTTTGGTGTAAAATCGGTTGTAGTCTGATTGTAGTTGGGCTGTAGTTTTGGTGTAAAATCGGTTGTAGTCTGATTGTAGTTGGGCTGTAGTTTTGGTGTAAAATCGGTTGTAGTCTGATTGTTGTTGGGCTGTAGTTTTGGTGTAAAATCGATTGTAGTCTGATTGTAGTTGGGCTGTAGTTATGGTGTGCTGACAGGCGATCCCTTGAGACTGTTGAGAGCTGCGTGGATCCGGAAGTGAAGCCTGGACTCCATGGAGTAGTCCTTGTAGTTCAacctagtcacacacacacacacacacacacacacacacacacacacacacacacacagtattttaTTACAATATTAGTGTAACTGACAGAAGAACGTGGGCGTCTGTATCTCAGATGGTAGAGGCGgtaaggtagcctagtggttagagtgtggaggcggcagcgtagcctagtggttagaatgtagaggcggcagggtagcctagtggttagagtgtagaggcggtatggtagcctagtggttagagtgtagggacggtatggtagcctagtggttagagtgtagaggcggcagcgtagcctagtggttagagtgtagaggcggcagcgtagcctagtggttagagtgtagaggtggtagggtagcctagtggttagagtgtagaggtggcagggtagcctagtggttagagtgtagaggtggcaggtagcctaggggttagagtgtagaggcggcagggtagcctagtggttagagtgtagaggcggcagcgtagcctagtggttagagtgtagaggcggcagcgtagcctagtggttagagtgtagaggcggtatggtagcctagtggttagagtgtagaggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870824 lncRNA downstream 12792 4245946 ~ 4246168 (-) True G765051
TU870820 lncRNA downstream 23401 4235291 ~ 4235559 (-) True G765047
TU870810 lncRNA downstream 35666 4222875 ~ 4223294 (-) True G765037
TU870805 lncRNA downstream 45639 4212725 ~ 4213321 (-) True G765032
TU870797 lncRNA downstream 49984 4208630 ~ 4208976 (-) True G765028
TU870834 lncRNA upstream 6493 4270732 ~ 4319826 (-) False G765059
TU870852 lncRNA upstream 10399 4274638 ~ 4286340 (-) True G765074
TU870853 lncRNA upstream 10630 4274869 ~ 4286446 (-) True G765075
TU870858 lncRNA upstream 14011 4278250 ~ 4299355 (-) False G765077
TU870859 lncRNA upstream 14584 4278823 ~ 4299355 (-) False G765077
XM_036987116.1 mRNA downstream 75448 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA downstream 75448 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA downstream 75448 4043130 ~ 4183512 (-) True LOC110531315
XM_036989232.1 mRNA downstream 225423 4012152 ~ 4033537 (-) False LOC118966151
XM_036987112.1 mRNA downstream 291632 3949068 ~ 3967328 (-) False LOC110513230
XM_036987124.1 mRNA upstream 79255 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 79255 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 79255 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 79255 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 90081 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 242551 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 242551 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 400067 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 959857 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1772059 2475074 ~ 2486901 (-) True G763719
TU870833 other upstream 26556 4290795 ~ 4319826 (-) True G765059
TU870890 other upstream 182088 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 202328 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 310606 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 791241 5055480 ~ 5057322 (-) True G765347

Expression Profile