RNA id: TU870858



Basic Information


Item Value
RNA id TU870858
length 359
lncRNA type antisense_over
GC content 0.36
exon number 3
gene id G765077
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4278250 ~ 4299766 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


acaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtttataactcaggtgattaaatataacaggtgtgtgtttataactcaggtgattaaatataacaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtttataactcaggtgagtgaatataacaggtgtgtgtctgttgttcccacaACATTAGGGCATAACGTTAACATTCCTTCAACATTGTGGTTACTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU870832 lncRNA downstream 14011 4258960 ~ 4264239 (-) True G765058
TU870824 lncRNA downstream 32082 4245946 ~ 4246168 (-) True G765051
TU870820 lncRNA downstream 42691 4235291 ~ 4235559 (-) True G765047
TU870810 lncRNA downstream 54956 4222875 ~ 4223294 (-) True G765037
TU870805 lncRNA downstream 64929 4212725 ~ 4213321 (-) True G765032
TU870867 lncRNA upstream 3781 4303136 ~ 4325539 (-) True G765082
TU870839 lncRNA upstream 5350 4304705 ~ 4311006 (-) False G765062
TU870840 lncRNA upstream 5350 4304705 ~ 4310869 (-) True G765062
TU870873 lncRNA upstream 30562 4329917 ~ 4330141 (-) True G765088
TU870877 lncRNA upstream 33593 4332948 ~ 4336062 (-) True G765092
XM_036987116.1 mRNA downstream 94738 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA downstream 94738 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA downstream 94738 4043130 ~ 4183512 (-) True LOC110531315
XM_036989232.1 mRNA downstream 244713 4012152 ~ 4033537 (-) False LOC118966151
XM_036987112.1 mRNA downstream 310922 3949068 ~ 3967328 (-) False LOC110513230
XM_036987124.1 mRNA upstream 44139 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 44139 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 44139 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 44139 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 54965 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 261841 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 261841 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 419357 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 979147 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1791349 2475074 ~ 2486901 (-) True G763719
TU870890 other upstream 146972 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 167212 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 275490 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 756125 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 998121 5297476 ~ 5298437 (-) True G765579

Expression Profile