RNA id: TU870867


Basic Information

Item Value
RNA id TU870867
length 283
lncRNA type read_through
GC content 0.43
exon number 2
gene id G765082
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4303136 ~ 4325539 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCCATAACTACCAGAGTGAGGACAGACATTTTCCGGAATAAACGTGGTGAGAGAAAAACGTAACTAAATGTCTCACTCTCTACCTGGTATCTTACTCTGCCGCTATACGACTTGGTATTCGTTGTTTCACCCAACCCGGTTCCAACCCGGTTCCACTCTACAGTGTTTTACAAAGTAACGTTACAACTGCAAACCCCACATTATCACTAGCTAGAAAACGTACTTACCGCCTGTGTCACTTGCTGTTGATGATATAATAATTAGTGAACACAACATGCAGAC

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870860 lncRNA downstream 3370 4299066 ~ 4299766 (-) True G765077
TU870858 lncRNA downstream 3781 4278250 ~ 4299355 (-) False G765077
TU870859 lncRNA downstream 3781 4278823 ~ 4299355 (-) False G765077
TU870862 lncRNA downstream 13036 4289126 ~ 4290100 (-) True G765078
TU870853 lncRNA downstream 16690 4274869 ~ 4286446 (-) True G765075
TU870873 lncRNA upstream 4378 4329917 ~ 4330141 (-) True G765088
TU870877 lncRNA upstream 7409 4332948 ~ 4336062 (-) True G765092
TU870927 lncRNA upstream 98469 4424008 ~ 4424432 (-) True G765123
TU870928 lncRNA upstream 99211 4424750 ~ 4426499 (-) True G765124
TU870935 lncRNA upstream 118871 4444410 ~ 4444864 (-) True G765130
XM_036987116.1 mRNA downstream 119624 4043130 ~ 4183512 (-) False LOC110531315
XM_036987117.1 mRNA downstream 119624 4043130 ~ 4183512 (-) False LOC110531315
XM_036987118.1 mRNA downstream 119624 4043130 ~ 4183512 (-) True LOC110531315
XM_036989232.1 mRNA downstream 269599 4012152 ~ 4033537 (-) False LOC118966151
XM_036987112.1 mRNA downstream 335808 3949068 ~ 3967328 (-) False LOC110513230
XM_036987124.1 mRNA upstream 17955 4343494 ~ 4357228 (-) False LOC110515469
XM_036987123.1 mRNA upstream 17955 4343494 ~ 4378661 (-) False LOC110515469
XM_036987125.1 mRNA upstream 17955 4343494 ~ 4393311 (-) False LOC110515469
XM_036987122.1 mRNA upstream 17955 4343494 ~ 4393314 (-) False LOC110515469
XM_036987126.1 mRNA upstream 28781 4354320 ~ 4378663 (-) True LOC110515469
TU870731 other downstream 286727 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 286727 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 444243 3851971 ~ 3858893 (-) False LOC110498423
TU869128 other downstream 1004033 3296302 ~ 3299103 (-) True G763961
TU868793 other downstream 1816235 2475074 ~ 2486901 (-) True G763719
TU870890 other upstream 120788 4446327 ~ 4536079 (-) False G765100
TU870887 other upstream 141028 4466567 ~ 4467708 (-) True G765100
TU870895 other upstream 249306 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 729941 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 971937 5297476 ~ 5298437 (-) True G765579

Expression Profile