RNA id: TU870961



Basic Information


Item Value
RNA id TU870961
length 384
lncRNA type inter_gene
GC content 0.39
exon number 2
gene id G765146
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4496433 ~ 4496948 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TCACTATATAATAGGAGAAATTTAAGAACCCACCCTGTATTGTATATAGGAGAGGTCAGGTAAATTTAAgaacccacccagtattgtatataggagaggtcgggtcaatttaacaacccacccagtattgtataTAGGAGAGGTCGGGTCAATTTAACAACCCACCCTGTATTGTATATAGGAGAGGTCAGGTAAATTTAAGAACCCACCCTGTATTGTATATAGGAGAGGTCAGGTAAATTTAACAACCCACCCTGTATTGTATATAGGAGAGGTCAGGTAAATTTAAGAACCCACCCTGTATTGTATATAGGAGAGGTCAGGTAAATTTAAGAACCCACCCCGTATTGTAAATAGGAGAGGTCGCAATTTATGCAACAAATT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU870960 lncRNA downstream 156 4494722 ~ 4496277 (-) True G765145
TU870935 lncRNA downstream 51569 4444410 ~ 4444864 (-) True G765130
TU870928 lncRNA downstream 69934 4424750 ~ 4426499 (-) True G765124
TU870927 lncRNA downstream 72001 4424008 ~ 4424432 (-) True G765123
TU870877 lncRNA downstream 160371 4332948 ~ 4336062 (-) True G765092
TU870962 lncRNA upstream 2048 4498996 ~ 4500176 (-) False G765147
TU870963 lncRNA upstream 2048 4498996 ~ 4500176 (-) True G765147
TU870970 lncRNA upstream 11594 4508542 ~ 4509432 (-) False G765151
TU870971 lncRNA upstream 11594 4508542 ~ 4509432 (-) True G765151
TU870951 lncRNA upstream 32150 4529098 ~ 4562212 (-) False G765143
XM_036987131.1 mRNA downstream 28746 4465470 ~ 4467687 (-) True LOC110518373
XM_036989234.1 mRNA downstream 48432 4445724 ~ 4448001 (-) True LOC110515470
XM_036987122.1 mRNA downstream 103119 4343494 ~ 4393314 (-) False LOC110515469
XM_036987125.1 mRNA downstream 103122 4343494 ~ 4393311 (-) False LOC110515469
XR_005053437.1 mRNA upstream 31703 4528651 ~ 4529593 (-) False LOC118966171
XR_005053438.1 mRNA upstream 31908 4528856 ~ 4529593 (-) True LOC118966171
XM_036987132.1 mRNA upstream 37217 4534165 ~ 4536040 (-) True LOC118965974
XR_005053146.1 mRNA upstream 67812 4564760 ~ 4565401 (-) True LOC118965975
XM_021594424.2 mRNA upstream 77215 4574163 ~ 4575866 (-) False LOC110515555
TU870887 other downstream 28725 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 176607 4290795 ~ 4319826 (-) True G765059
TU870731 other downstream 480024 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 480024 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 637540 3851971 ~ 3858893 (-) False LOC110498423
TU870895 other upstream 77897 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 558532 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 800528 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1704421 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1704421 6201369 ~ 6209209 (-) False G766599

Expression Profile