RNA id: TU870970



Basic Information


Item Value
RNA id TU870970
length 836
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id G765151
representative False

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4508542 ~ 4509432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


aacccactgttcctagaccagttaacccactgttccaaaaccagttaacccactgttcctagaccagttaacccactgttcctagaccagttaacctgcACTGTAGGCTATTCAATTTCTACTGTAGGCTATTCAGTTCCTACTGTAGGCTATTCAGTTCCTACTGTAGGCTATTCAGTTCCTACTGTAGCCAAACCAATCCCTCCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGATAAACCAATCCCACCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGGTAAACCAATCCCTCCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGGTAAACCAATCCCTCCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGGTAAACCAATCCCTCCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGGTAAACCAATCCCTCCTAATATACTGGTCCAACAGTATGTTTCAGGTGATTATAGGTAAACCAATCCCTACTATTGGAGACACCACTGTGCTCCCATTGATTAATGTTAACCGGTTAGATTCATTATTATAGGGAAGAGACAGTTCTGCCAAATTGAACACCAACATTTTGTGGCTGAGGAGGACAAGAGTTCTTTCACCATTAATGCTCGGCTGGACAACAGACAGTCTTTTTAAAGTTGTGGCCAGAGTGATGTCCGAGTCCATCTGGGTCACGGCACCAAATATTGTGGAAAATTAGATCCAAAGATGAAGGCAGAGACTTTTTAATTGTATAGAAACATCTTTAATCAAGCAGCTGCAGGGGACATG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU870962 lncRNA downstream 8366 4498996 ~ 4500176 (-) False G765147
TU870963 lncRNA downstream 8366 4498996 ~ 4500176 (-) True G765147
TU870961 lncRNA downstream 11594 4496433 ~ 4496948 (-) True G765146
TU870960 lncRNA downstream 12265 4494722 ~ 4496277 (-) True G765145
TU870935 lncRNA downstream 63678 4444410 ~ 4444864 (-) True G765130
TU870951 lncRNA upstream 19666 4529098 ~ 4562212 (-) False G765143
TU870946 lncRNA upstream 43822 4553254 ~ 4553720 (-) True G765141
TU870949 lncRNA upstream 50661 4560093 ~ 4562212 (-) False G765143
TU870952 lncRNA upstream 52458 4561890 ~ 4562212 (-) True G765143
TU870993 lncRNA upstream 72399 4581831 ~ 4582866 (-) True G765168
XM_036987131.1 mRNA downstream 40855 4465470 ~ 4467687 (-) True LOC110518373
XM_036989234.1 mRNA downstream 60541 4445724 ~ 4448001 (-) True LOC110515470
XM_036987122.1 mRNA downstream 115228 4343494 ~ 4393314 (-) False LOC110515469
XM_036987125.1 mRNA downstream 115231 4343494 ~ 4393311 (-) False LOC110515469
XR_005053437.1 mRNA upstream 19219 4528651 ~ 4529593 (-) False LOC118966171
XR_005053438.1 mRNA upstream 19424 4528856 ~ 4529593 (-) True LOC118966171
XM_036987132.1 mRNA upstream 24733 4534165 ~ 4536040 (-) True LOC118965974
XR_005053146.1 mRNA upstream 55328 4564760 ~ 4565401 (-) True LOC118965975
XM_021594424.2 mRNA upstream 64731 4574163 ~ 4575866 (-) False LOC110515555
TU870887 other downstream 40834 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 188716 4290795 ~ 4319826 (-) True G765059
TU870731 other downstream 492133 4013834 ~ 4016409 (-) False LOC118966151
TU870733 other downstream 492133 4013834 ~ 4016409 (-) True LOC118966151
TU869858 other downstream 649649 3851971 ~ 3858893 (-) False LOC110498423
TU870895 other upstream 65413 4574845 ~ 4575872 (-) True LOC110515555
TU871235 other upstream 546048 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 788044 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1691937 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1691937 6201369 ~ 6209209 (-) False G766599

Expression Profile