RNA id: TU871007


Basic Information

Item Value
RNA id TU871007
length 464
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G765182
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4613449 ~ 4614168 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctttctatttttctctctttctctctctctttctttctctctttctttctctctttctctctttctttctttctttctttctttctttctttctctctttctttctctctttttctctctttctttctctctttctttctctctttctttctctctctctttctctctttctttctttctttctctctttctttctttctctctctctctttttctctctttctttctctttttctatctttctctctttctctctctctctctttctttctctctctctctctttctttccctctttctctctttctctctttcattctttctttcattctttctttctttgccaCCACATGGTGGCTGCAGGACAAATAAATAATTTCAACCCTTATTACGTGGTTGATTATTTTTCTAGGGGCACTGGTGTTCCTAAATTAAAAGGTCCAGGAAGCACAGCATAATAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU870993 lncRNA downstream 30583 4581831 ~ 4582866 (-) True G765168
TU870951 lncRNA downstream 51237 4529098 ~ 4562212 (-) False G765143
TU870949 lncRNA downstream 51237 4560093 ~ 4562212 (-) False G765143
TU870952 lncRNA downstream 51237 4561890 ~ 4562212 (-) True G765143
TU870946 lncRNA downstream 59729 4553254 ~ 4553720 (-) True G765141
TU871033 lncRNA upstream 2745 4616913 ~ 4629021 (-) False G765183
TU871038 lncRNA upstream 6548 4620716 ~ 4621245 (-) True G765184
TU871018 lncRNA upstream 11421 4625589 ~ 4629021 (-) False G765183
TU871037 lncRNA upstream 11712 4625880 ~ 4627261 (-) True G765183
TU871042 lncRNA upstream 22971 4637139 ~ 4638023 (-) True G765188
XM_021594424.2 mRNA downstream 37583 4574163 ~ 4575866 (-) False LOC110515555
XR_005053146.1 mRNA downstream 48048 4564760 ~ 4565401 (-) True LOC118965975
XM_036987132.1 mRNA downstream 77409 4534165 ~ 4536040 (-) True LOC118965974
XR_005053437.1 mRNA downstream 83856 4528651 ~ 4529593 (-) False LOC118966171
XM_036987137.1 mRNA upstream 260914 4875082 ~ 4879698 (-) True LOC118965976
XM_036987135.1 mRNA upstream 265736 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA upstream 266014 4880182 ~ 4900797 (-) True rbm46
XM_036987138.1 mRNA upstream 287718 4901886 ~ 4916456 (-) True LOC118965977
XM_036987139.1 mRNA upstream 308863 4923031 ~ 4933486 (-) False LOC110532986
TU870895 other downstream 37577 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 77370 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 145741 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 293623 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 597040 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 441312 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 683308 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1587201 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1587201 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1637429 6251597 ~ 6256628 (-) True G766640

Expression Profile