RNA id: TU871033


Basic Information

Item Value
RNA id TU871033
length 1392
lncRNA type inter_gene
GC content 0.45
exon number 4
gene id G765183
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4616913 ~ 4629021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagtaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttcaccaccagtaggtaaactccctctgtagtctggtctccttcaccaccagtaggtaaactccctctttacctctgtagtctggtctccttcatcaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcatcaccagcaggtaaactccctctgtagtctggtctccttcaccaccagtaggtaaactccctctttacctctgtagtctggtctccttcatcaccagcaggtaaactccctctttacctctgtagtctggtctccttccccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcaggtaaactccctctttacctctgtagtctggtctccttcaccaccagcagttaccataccaggtctgctaggtggttgctgcttaaagtccccaggacattcacagtattaggcaagactgccttctcttcctGTGCACCAGActcatggaatagtctacaatccctgcttcatctagatatgttagtgcctctgaatggaatagtctacaatccctgcttcatctagatatgttagtgcctctgaatggaatagtctacaatccctgcttcttctagatatgttagtgcctctgaatggaatagtctacaatccctgcttcatctagatatgttagtgcctctgaatggaatagtctacaatccctgcttcatctagatatggTATTGTAAATGCTTAtttttttaggctggatcatgttgttgtatgttttaaatCTGTAATGTACTGATTGTTGCTGCCtccttggccaggtctccctttgAACAAGAGGCTCTAAGGGTCtcaatggttaaataaaggttaaataaataaaatgtccaTCACATCAACGTGATCAACATGTTTAGAGACGATACCGTGTTTGTTTACGTGATCTTTTTTAATACGTTGGCTTGAACTAGCCTActtttcaagaatcaatgggtttatatcattcatttataagtccaaacaTGTATGTAGtaactgcagatttcccctttaatggTAACAAGCGTTTAGGAGCACCAGAAACACATATTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871007 lncRNA downstream 2745 4613449 ~ 4614168 (-) True G765182
TU870993 lncRNA downstream 34047 4581831 ~ 4582866 (-) True G765168
TU870951 lncRNA downstream 54701 4529098 ~ 4562212 (-) False G765143
TU871042 lncRNA upstream 8118 4637139 ~ 4638023 (-) True G765188
TU871064 lncRNA upstream 56149 4685170 ~ 4686515 (-) True G765210
TU871068 lncRNA upstream 71264 4700285 ~ 4892679 (-) True G765214
TU871071 lncRNA upstream 79729 4708750 ~ 4709183 (-) True G765217
TU871082 lncRNA upstream 131142 4760163 ~ 4762575 (-) True G765224
XM_021594424.2 mRNA downstream 41047 4574163 ~ 4575866 (-) False LOC110515555
XR_005053146.1 mRNA downstream 51512 4564760 ~ 4565401 (-) True LOC118965975
XM_036987132.1 mRNA downstream 80873 4534165 ~ 4536040 (-) True LOC118965974
XR_005053437.1 mRNA downstream 87320 4528651 ~ 4529593 (-) False LOC118966171
XM_036987137.1 mRNA upstream 246061 4875082 ~ 4879698 (-) True LOC118965976
XM_036987135.1 mRNA upstream 250883 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA upstream 251161 4880182 ~ 4900797 (-) True rbm46
XM_036987138.1 mRNA upstream 272865 4901886 ~ 4916456 (-) True LOC118965977
XM_036987139.1 mRNA upstream 294010 4923031 ~ 4933486 (-) False LOC110532986
TU870895 other downstream 41041 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 80834 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 149205 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 297087 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 600504 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 426459 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 668455 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1572348 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1572348 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1622576 6251597 ~ 6256628 (-) True G766640

Expression Profile