RNA id: TU871167


Basic Information

Item Value
RNA id TU871167
length 1311
lncRNA type sense_over
GC content 0.45
exon number 3
gene id G765292
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4919263 ~ 4929340 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCGGgttctgttcattctgttccatCGGTTCTAGTAAAAGAACAAGTTGAGGCTatacatccaaaatggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccagggccctattccctatatagtacactactatagaccagagacctattccctatatagtgcactactttagaccagagccctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactttagaccagggccctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactttagaccagggctggcatcctattccctatatagtgtactactatagaccagagccctattccctatatagtgcactacttcagaccagagccctattccctatatagtgcactacttcagaccagagccctattccctatatagtgcactactttagaccagggctatcaccctattccctatatagtgccctactttagaccaggactggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccaggactggcaccctattccctatatagtggcactactttagaccaggactggcaccctattccctatatagtgcactactttagaccagagccatattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactactttagaccagagccatattccctatatagtgcactactttagaccagagccatattccctatatagtggcactactatagaccagagccctattccctatatagtgcactactatagaccagagccctattccctatatagtgcactacttcagaccagagccctattccctacatagtgcactactttagaccagggccctatggcaccctattccctacatagtacactactttagtccagggccctatggcaccctattccctacacatagtacactactttagaccagggccctatggcaccctattccctacatagtacactactttagaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871148 lncRNA downstream 3224 4914970 ~ 4916039 (-) True G765280
TU871155 lncRNA downstream 9236 4900342 ~ 4910027 (-) True G765286
TU871164 lncRNA downstream 12236 4904098 ~ 4907027 (-) True G765290
TU871165 lncRNA downstream 13936 4904893 ~ 4905327 (-) True G765291
TU871153 lncRNA downstream 29318 4889091 ~ 4889945 (-) True G765284
TU871199 lncRNA upstream 54933 4984273 ~ 5000017 (-) True G765315
TU871200 lncRNA upstream 56646 4985986 ~ 5015991 (-) False LOC110518233
TU871206 lncRNA upstream 58153 4987493 ~ 5008878 (-) True G765320
TU871201 lncRNA upstream 73094 5002434 ~ 5003604 (-) False LOC110518233
TU871202 lncRNA upstream 87932 5017272 ~ 5018456 (-) True LOC110518233
XM_036987138.1 mRNA downstream 2807 4901886 ~ 4916456 (-) True LOC118965977
XM_036987135.1 mRNA downstream 18466 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA downstream 18466 4880182 ~ 4900797 (-) True rbm46
XM_036987137.1 mRNA downstream 39565 4875082 ~ 4879698 (-) True LOC118965976
XM_021594424.2 mRNA downstream 343397 4574163 ~ 4575866 (-) False LOC110515555
XM_036987140.1 mRNA upstream 56472 4985812 ~ 5018523 (-) False LOC110518233
XM_036987142.1 mRNA upstream 56472 4985812 ~ 5018523 (-) False LOC110518233
XM_036987145.1 mRNA upstream 56472 4985812 ~ 5018523 (-) False LOC110518233
XM_036987141.1 mRNA upstream 56475 4985815 ~ 5018518 (-) False LOC110518233
XM_036987144.1 mRNA upstream 56477 4985817 ~ 4993269 (-) False LOC110518233
TU870895 other downstream 343391 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 383184 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 451555 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 599437 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 902854 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 126140 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 368136 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1272029 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1272029 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1322257 6251597 ~ 6256628 (-) True G766640

Expression Profile