RNA id: TU871199


Basic Information

Item Value
RNA id TU871199
length 673
lncRNA type sense_over
GC content 0.44
exon number 2
gene id G765315
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 4984273 ~ 5000017 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtctaaatactttctgaatgcagctgggggattcgatccagcaacctttcgtttactggcccaacgcttttctctaggcgacctgccgccccatggctctatgtagtaagGTGTTCGCAATGGGCTTATATGATAAACTTAGCACACAATATATACAGCTAGCAAAGGTAATAACTTAGCACGCTAGGCTAGCAGGCTGAATATATAGCAATAATAAAACCAGCACCATTAGTGGTAGTGAGTTAGCATGCTGTGTGGCTAACAATGCTAATATGTAAACAGACAGCCATCTTGGTAGAGGTTCGTATGAGGAATTGACCAGGTGTGATGACTTCACCGATCGGCCATACTGGTTGTGTAAGAATGATCGCCTGGTAGCCATCTTAGACACAACCACCAATGGAAGGCCTGAATACTGTTCTGTACCCAGAACTATGCCAAGGGGATAGATAAACAGGATAAGCAGTATGGATAGTACCCATACATGAATTACTGGCATATAAACACTGGTTAAGGCATGTATTACAGAAGCACGTCTGTTGTAAATATCTTCTCTGTAACGGTGTATGCACAGCACTGACATGCATGATTGTTGATCATGTTCAGAAGAAGGCAATTAAATCGTCTACTGTACACAGCGCACCACAGCAGCCTCAACTCTGACAGCTGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871167 lncRNA downstream 54933 4919263 ~ 4929340 (-) True G765292
TU871174 lncRNA downstream 60789 4922850 ~ 4923484 (-) True LOC110532986
TU871175 lncRNA downstream 62040 4921258 ~ 4922233 (-) True G765295
TU871148 lncRNA downstream 68234 4914970 ~ 4916039 (-) True G765280
TU871155 lncRNA downstream 74246 4900342 ~ 4910027 (-) True G765286
TU871201 lncRNA upstream 2417 5002434 ~ 5003604 (-) False LOC110518233
TU871202 lncRNA upstream 17255 5017272 ~ 5018456 (-) True LOC110518233
TU871230 lncRNA upstream 45518 5045535 ~ 5047502 (-) True G765343
TU871269 lncRNA upstream 146296 5146313 ~ 5146613 (-) True G765377
TU871473 lncRNA upstream 182123 5182140 ~ 5183023 (-) True G765529
XM_036987139.1 mRNA downstream 50787 4923031 ~ 4933486 (-) False LOC110532986
XM_036987138.1 mRNA downstream 67817 4901886 ~ 4916456 (-) True LOC118965977
XM_036987135.1 mRNA downstream 83476 4879904 ~ 4900797 (-) False rbm46
XM_036987136.1 mRNA downstream 83476 4880182 ~ 4900797 (-) True rbm46
XM_036987137.1 mRNA downstream 104575 4875082 ~ 4879698 (-) True LOC118965976
XM_036987150.1 mRNA upstream 58012 5058029 ~ 5075839 (-) True LOC110532892
XM_036987153.1 mRNA upstream 194226 5194243 ~ 5241804 (-) False LOC110511386
XM_036987156.1 mRNA upstream 194226 5194243 ~ 5241804 (-) False LOC110511386
XM_036987158.1 mRNA upstream 194226 5194243 ~ 5241804 (-) False LOC110511386
XM_036987157.1 mRNA upstream 194226 5194243 ~ 5241805 (-) False LOC110511386
TU870895 other downstream 408401 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 448194 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 516565 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 664447 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 967864 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 55463 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 297459 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1201352 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1201352 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1251580 6251597 ~ 6256628 (-) True G766640

Expression Profile