RNA id: TU871230


Basic Information

Item Value
RNA id TU871230
length 1627
lncRNA type antisense_over
GC content 0.42
exon number 3
gene id G765343
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5045535 ~ 5047502 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggagaggagaggagaggagaggagaggagaggagagagagagagagagagagagagagaggggagacattTCACTTTTGTAGTGTGAGTaatactgaacataaatataaaacCATTtctaatattttactgagttacagttcatataatgaaaATCATTCAATTAATTAAATTGTTCCCTAATCtaaggatttcacatgactgggaacacagatatacatctgttgatcacagataccttttttaaAAAAAGGAAGGGGTGTGGATCATAAAACCGAGTCCGTATCTGAtgtgaccatcatttgcctcatgcagcgcgacacatctccttcacatagagttgatcaggctgtttgattgtggactgtggaatgttgtcccagtcctcttcaatggctgtgcgaagttgctggatattggcgagaactggaacacgctgtcgtactgGTCTACCACACAACCCtcccaagccacactgcttcttgacacactgctcgcttaacccggaaactGGTTTACTATGCTACTGGTTAACTACTGGTTTACTACTCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGTTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGTTTAACTACTTGTTTACTATGCTACTGGTTAACTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTAACTACTGGTTTACTGTGCTACTAGTTAACTACTGGTTTACTGTGCTACTGGTTAACTACTGGTTTACTATGCTACTGGTTAACTACTGGTTAACTACTGGGTTACTATGCTACTGGTTAACTATGGGTTTACTACTGGTTTACTGTGCTACTGGTTAACTACTGGTTTACTGTGCTACTGGTTAACTACTGGTTTACTGTGCTACGGGTCAACTACTGGTTAACTACTGGTTTACTGTGCTCCTGGTTAACTACTGGTTAACCACTGGTTCATGGTGCTACTGGTTAACTACTGGTTAACTACTGGTTAACTACTGGTTAACTACTGGTTTACTGTGCTACTGGTTAACTACTGGTTAACTACTAGTTGACTGTGCTACTGGTAAACCACTGGTTTACTGTGCTACTGGTTAACTACTGGTTAACTACTGGTTAACTACCTCTACAAACagtgttaaacacacacacctggcaacaccACATGTAAGGAACTGTCTGTGCCGAAGAGCAACACTCCTCCTACCTTTAATATCTCTGTGAATCTTCTTCTCCGAGTGAAGGTAGTCCAGACCCTTCAGAATCTCCCTCAGCATGGTGGCAATCTGGCACTCATCAAACGGACCTGCACgcaactgaacacacacacatctcacacacacacactttcagaaaataaaccaccacacatacacacacttaccaGGTCTAGAGCTGAGCCCCCTCCTAGATACTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871202 lncRNA downstream 27079 5017272 ~ 5018456 (-) True LOC110518233
TU871200 lncRNA downstream 29544 4985986 ~ 5015991 (-) False LOC110518233
TU871206 lncRNA downstream 36657 4987493 ~ 5008878 (-) True G765320
TU871201 lncRNA downstream 41931 5002434 ~ 5003604 (-) False LOC110518233
TU871199 lncRNA downstream 45518 4984273 ~ 5000017 (-) True G765315
TU871269 lncRNA upstream 98811 5146313 ~ 5146613 (-) True G765377
TU871473 lncRNA upstream 134638 5182140 ~ 5183023 (-) True G765529
TU871474 lncRNA upstream 134822 5182324 ~ 5214592 (-) False G765530
TU871475 lncRNA upstream 134822 5182324 ~ 5214592 (-) False G765530
TU871476 lncRNA upstream 134822 5182324 ~ 5214592 (-) True G765530
XM_036987140.1 mRNA downstream 27012 4985812 ~ 5018523 (-) False LOC110518233
XM_036987142.1 mRNA downstream 27012 4985812 ~ 5018523 (-) False LOC110518233
XM_036987145.1 mRNA downstream 27012 4985812 ~ 5018523 (-) False LOC110518233
XM_036987141.1 mRNA downstream 27017 4985815 ~ 5018518 (-) False LOC110518233
XM_036987146.1 mRNA downstream 27019 4985817 ~ 5018516 (-) False LOC110518233
XM_036987150.1 mRNA upstream 10527 5058029 ~ 5075839 (-) True LOC110532892
XM_036987153.1 mRNA upstream 146741 5194243 ~ 5241804 (-) False LOC110511386
XM_036987156.1 mRNA upstream 146741 5194243 ~ 5241804 (-) False LOC110511386
XM_036987158.1 mRNA upstream 146741 5194243 ~ 5241804 (-) False LOC110511386
XM_036987157.1 mRNA upstream 146741 5194243 ~ 5241805 (-) False LOC110511386
TU870895 other downstream 469663 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 509456 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 577827 4466567 ~ 4467708 (-) True G765100
TU870833 other downstream 725709 4290795 ~ 4319826 (-) True G765059
TU870733 other downstream 1029126 4013834 ~ 4016409 (-) True LOC118966151
TU871235 other upstream 7978 5055480 ~ 5057322 (-) True G765347
TU871540 other upstream 249974 5297476 ~ 5298437 (-) True G765579
TU872873 other upstream 1153867 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 1153867 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 1204095 6251597 ~ 6256628 (-) True G766640

Expression Profile