RNA id: TU871550


Basic Information

Item Value
RNA id TU871550
length 472
lncRNA type read_through
GC content 0.54
exon number 2
gene id G765583
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5354806 ~ 5387716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggagagagagggggagagatggagacggagggggagacagagggggagagatagagacggagggggagagagatgggggagagagagggggagagatggagacggagggggagacagagggggagagatagagacggagggggagagagagggggaaaggagggggagagagagagaagagggaggcagaaagagtgggagagatgATCTGTGTCTAGTTAACAACTATTGATGTCTATTGATCCTTGTCTTTACTCAGAGAACCTCTGACACACACGTACTGACCTTGGCAAAGCGGttgctgccctctctctccttgtgtaGGTTGTAGCCAGAGAGCCTCTGACACACATTCTCCACAACCTCAATGAAACGGAtgtctctacagagagagagagagagagagagagagagagagagagagggagagagagagagagagagagagagagagaaagagagagagagaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871522 lncRNA downstream 92832 5261339 ~ 5261974 (-) True G765563
TU871474 lncRNA downstream 140214 5182324 ~ 5214592 (-) False G765530
TU871475 lncRNA downstream 140214 5182324 ~ 5214592 (-) False G765530
TU871476 lncRNA downstream 140214 5182324 ~ 5214592 (-) True G765530
TU871492 lncRNA downstream 164012 5189767 ~ 5190794 (-) True G765539
TU871545 lncRNA upstream 1207 5388923 ~ 5393253 (-) False G765581
TU871546 lncRNA upstream 1207 5388923 ~ 5393253 (-) False G765581
TU871544 lncRNA upstream 1692 5389408 ~ 5393253 (-) False G765581
TU871547 lncRNA upstream 1692 5389408 ~ 5393253 (-) False G765581
TU871548 lncRNA upstream 1692 5389408 ~ 5393253 (-) True G765581
XM_036987155.1 mRNA downstream 107184 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 107257 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 112999 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 113000 5194243 ~ 5241806 (-) False LOC110511386
XM_036987157.1 mRNA downstream 113001 5194243 ~ 5241805 (-) False LOC110511386
XM_036989236.1 mRNA upstream 425707 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 595056 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 678780 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 678780 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 678780 6066496 ~ 6190414 (-) False exoc6b
TU871540 other downstream 56369 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 297484 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 778934 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 818727 4446327 ~ 4536079 (-) False G765100
TU870887 other downstream 887098 4466567 ~ 4467708 (-) True G765100
TU872873 other upstream 813653 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 813653 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 863881 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 952905 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 952905 6340621 ~ 6365528 (-) False G766665

Expression Profile