RNA id: TU871546


Basic Information

Item Value
RNA id TU871546
length 4093
lncRNA type antisense_over
GC content 0.48
exon number 3
gene id G765581
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5388923 ~ 5393253 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGCAGTGATTTTATTGACACACCTTGCTGTTTCACCAAGACCCACAGCTAACATCTTTCCCTCACTCAACAATCCTGACAACATTTACACACAAGgtcttaaaaacacacacacacacacacacacacacacacacataaaatgtaaagtgttggtcccgtgttccatgagctgaaatagaagattccagaaatgttccatacgcacaaaaagtttattttttttttcatcacaaatttgtttatatccctgttagtgagcatttctcctttgccaagataatccatccacttgacaggtgttgcatatcaagaagctgattaaacagcacgatcgttacataggtgtaccttgtgctgggggacaataaatggccactctaaaatgttttgtcacacaacacaatgccacagatgtctcaagttttgaaagaGCCATCAATTGGGATGCTAActccaggaatgtccaccagagctgttgccagataatttaacgTCCATTTCTCTATTATAAGCctcctccaatgtcgttttagagaatttggcagtacgtacaaccggcctcacaaccgcagaccacgtgtaaccacgccagcccaggacctccacatctggcttcttcaactgagggatggtctgagaccagccaccaggacagctgatgaaactgaggagtatttctgtctgtaataaagcccttttgtagggaaaaacaaattctgattggctgggcctggctcccaagtgggtgggcctggctcccaagtgggtgggcctatgctctcccaggcccagccatggctgtgcccctgctcaGTCACGTGAAATCCCCTGATTagtgcctaatttatttatttcaatggactgatttccatatatgaactgtaactcagtaaagtcttttaaaattgttttatgttgcgtttatatttttgtacagtaTAAATAGTCTCAGCTGAGTCACTGACCGAGAAAAACAACAATCTTAAACActgcaaaaataaacaaaaatccaGCAGACTACTACAACAAAAATTAAAGGACAAAATAAAGACAAATCAATGAGGCTTGAATAAAATCATAAGGGTTATTCTACattgaaaatataaaataaatataccgTTTTCGTAAAAAGTCTAATTTTCTTTGATATACAGTGTATTTATattgaaaagaaaaaaaagatacCAACCAATGTTGCTTCACTTCATGACCGGTCGGTTGTCTGTAAAAAATGATTAACCTAAAGTAAAACTCCTTCTTTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTTAATAGAGGCCTGTCAGTCGAGAGCTTGTTAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGACAGCTTGTTAATAGAGGCCTGTCAGTCGAGAGCTTGTTAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTAGTCAATAGAGGCCTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTAGTCAAAAGAGGCCTGTCAGTCGAGAGCTTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTAGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTAGTCAATAGAGGCCTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGGGCTTGTCAATAGAGGCCTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAATAGAGGCCTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGGCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAATAGAGGCCTATCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTTGCCGATAGAGGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTGGCCGATAGAGGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGCCGATAGAGGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGCCGATAGAGGCTAGTCAGTCGAGAGCTTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGCCGATAGAGGCTAGTCAGTCGAGAGCTAGTCAGTAGAGGCTAGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTAGTCAGTAGAGGCTAGTCAGTCGAGAGCTAGTCAGTAGAGGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGCCGATAGAGGCCTGTCAGTCGAGAGCTTGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTAGTCAGTCGAGAGCTTGCCAATAGAGGCCTTGTAATGTTCCTCCCCATTAGAatacaatattattattattattggtatcaAAAAAATCTGTTGAACACGTGTAACCAAAGCATGAGGCAAAAACACATGTAAAAGCAACAAGAATGTGTCTgagaacagcacacacacacacacacacacacacacacacacacacacacacgaccataGATTCAGTAGTATTGTCAATAAAACCATTCAGAATTACCGAGAGTAAAGGGTTTCTGGGGGGGGGGAATCCAAATCAAATAATCACTGGGGGGGGGGAGACTCCAAATCAAATaatcactgggggggggggggtccaaatcaaaacggcaccctattccctattaggtgaactacttttgaccaagggaGTAGTGCgctgtgtagggaatagtgtgccattttgggAATTGGCCCAGGGCTCCATTCCTCCAGGGTCTCACAGCTCTGTGTTCTTCCCAGGCAGAGCCACCTTTTTCTGAATGTCTTCATCCGACGAGaccccatccctctccttctcagcCGATACTGCCTTTCCcttccccttcttcttcttcttcttcaccttctccttcttctttttcttcatcGTCTTCTCTCCTTCCTGCCTGCCGCcttcactccctcctcctcctcctcctcctcctcctcccaggtcTTTGCTCTTCGTtcccttcttctttttcttcttcttgtctTCGGCGATGGCTGCCGCATCTCCCTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871550 lncRNA downstream 1207 5354806 ~ 5387716 (-) True G765583
TU871579 lncRNA downstream 8982 5379538 ~ 5379941 (-) True G765605
TU871577 lncRNA downstream 17284 5370573 ~ 5371639 (-) True G765603
TU871522 lncRNA downstream 126949 5261339 ~ 5261974 (-) True G765563
TU871475 lncRNA downstream 174331 5182324 ~ 5214592 (-) False G765530
TU871591 lncRNA upstream 21954 5415207 ~ 5415906 (-) True G765613
TU871660 lncRNA upstream 180985 5574238 ~ 5575534 (-) True G765673
TU871665 lncRNA upstream 186384 5579637 ~ 5580120 (-) True G765677
TU871666 lncRNA upstream 187081 5580334 ~ 5580786 (-) True G765678
TU871690 lncRNA upstream 206340 5599593 ~ 5599999 (-) False G765697
XM_036987155.1 mRNA downstream 141301 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 141374 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 147116 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 147117 5194243 ~ 5241806 (-) False LOC110511386
XM_036987157.1 mRNA downstream 147118 5194243 ~ 5241805 (-) False LOC110511386
XM_036989236.1 mRNA upstream 420170 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 589519 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 673243 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 673243 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 673243 6066496 ~ 6190414 (-) False exoc6b
TU871540 other downstream 90486 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 331601 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 813051 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 852844 4446327 ~ 4536079 (-) False G765100
TU872873 other upstream 808116 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 808116 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 858344 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 947368 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 947368 6340621 ~ 6365528 (-) False G766665

Expression Profile