RNA id: TU871660


Basic Information

Item Value
RNA id TU871660
length 337
lncRNA type intronic
GC content 0.45
exon number 3
gene id G765673
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5574238 ~ 5575534 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTATGATGTCATGCAGAGTGGATGAGGTTCAGGTATGATATCATGCAGAGTGGATGAGGTTCAGGTATGATAACATGGAGAGTGGATGAGATTCAGGTATGATATCAAGCAGAGTGGATGAGGTTCAGGTATGATAACATGCAGAGTGGATGAGGTTCAGGTATGATAACATGCAGAGTGGATGAGGTTCAGGTATGATGTCATGCAGAGTGGATGAGGTTCAGGTATGATGTCATGCAGAGTGGATGAGGTTCAGGTATGATGTCATGCAGAGTGGATGAGGTTCAGGTATGATGTCATGCAGAGTGGATGAGATGCATGCCTGTGTCAGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871591 lncRNA downstream 158332 5415207 ~ 5415906 (-) True G765613
TU871545 lncRNA downstream 180985 5388923 ~ 5393253 (-) False G765581
TU871665 lncRNA upstream 4103 5579637 ~ 5580120 (-) True G765677
TU871666 lncRNA upstream 4800 5580334 ~ 5580786 (-) True G765678
TU871690 lncRNA upstream 24059 5599593 ~ 5599999 (-) False G765697
TU871691 lncRNA upstream 24059 5599593 ~ 5599999 (-) False G765697
TU871692 lncRNA upstream 24059 5599593 ~ 5599999 (-) False G765697
XM_036987155.1 mRNA downstream 326616 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 326689 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 332431 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 332432 5194243 ~ 5241806 (-) False LOC110511386
XM_036987157.1 mRNA downstream 332433 5194243 ~ 5241805 (-) False LOC110511386
XM_036989236.1 mRNA upstream 237889 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 407238 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 490962 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 490962 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 490962 6066496 ~ 6190414 (-) False exoc6b
TU871540 other downstream 275801 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 516916 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 998366 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 1038159 4446327 ~ 4536079 (-) False G765100
TU872873 other upstream 625835 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 625835 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 676063 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 765087 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 765087 6340621 ~ 6365528 (-) False G766665

Expression Profile