RNA id: TU871707


Basic Information

Item Value
RNA id TU871707
length 334
lncRNA type inter_gene
GC content 0.52
exon number 2
gene id G765707
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5632285 ~ 5632716 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGATTTTCAGGCTGTCCAAGAGGAAATGCAGTAATGCTCAAGCTGACCACCATCCTGTTTCCCAAGAACACTGAGGCTACCTACCACAATGActactgccctgtagcactcacatcaacGTCATCATCCCAGACCCCAACAGatagacgacgcaatctcaaatgaaccatggggcggcagggtagcctagtggttagagtgtagaggcggcagggtagcctagtggttagagtgtagaggcggcagggtagcctagtggttagagtgtagaggcgacagggtagcctagtggttagagcgttggactagtaaccggaaggttgcaagttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871698 lncRNA downstream 31801 5600168 ~ 5600484 (-) True G765698
TU871693 lncRNA downstream 32286 5599593 ~ 5599999 (-) False G765697
TU871709 lncRNA upstream 1816 5634532 ~ 5634751 (-) True G765709
TU871715 lncRNA upstream 9971 5642687 ~ 5643102 (-) True G765715
TU871770 lncRNA upstream 42430 5675146 ~ 5676141 (-) True G765760
TU871776 lncRNA upstream 49469 5682185 ~ 5683021 (-) True G765766
TU871883 lncRNA upstream 183871 5816587 ~ 5821603 (-) True G765855
XM_036987155.1 mRNA downstream 384663 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 384736 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 390478 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 390479 5194243 ~ 5241806 (-) False LOC110511386
XM_036987157.1 mRNA downstream 390480 5194243 ~ 5241805 (-) False LOC110511386
XM_036989236.1 mRNA upstream 180707 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 350056 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 433780 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 433780 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 433780 6066496 ~ 6190414 (-) False exoc6b
TU871540 other downstream 333848 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 574963 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 1056413 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 1096206 4446327 ~ 4536079 (-) False G765100
TU872873 other upstream 568653 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 568653 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 618881 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 707905 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 707905 6340621 ~ 6365528 (-) False G766665

Expression Profile