RNA id: TU871715


Basic Information

Item Value
RNA id TU871715
length 416
lncRNA type inter_gene
GC content 0.52
exon number 1
gene id G765715
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 5642687 ~ 5643102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggcgggttattgattctgggctccggagattcgaaagccctggaagtggccggtggatcgaggcggagatggtgaacctgttctgtgaggttggagacttgggtggccagggtctcaacggcatgtcgagcagcagacaattcctgctcgtgtctgcctagcatcgctccctggatcccgacggctgagtggagaggatccgaagtcgctgggtccattcttggtcggattcttctgttacggtgagtgaatgaggacccaaaagcgaactaacttaaacagagcttctttaataaccaaacataggtaggctcagatagaccggcagattccaacaggacaggacaaggttacagcaaacatgacgatagtctggctcaggcatgaaacacaacaaacaagaatccgacaaggac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU871709 lncRNA downstream 7936 5634532 ~ 5634751 (-) True G765709
TU871707 lncRNA downstream 9971 5632285 ~ 5632716 (-) True G765707
TU871698 lncRNA downstream 42203 5600168 ~ 5600484 (-) True G765698
TU871695 lncRNA downstream 42688 5599593 ~ 5599999 (-) False G765697
TU871770 lncRNA upstream 32044 5675146 ~ 5676141 (-) True G765760
TU871776 lncRNA upstream 39083 5682185 ~ 5683021 (-) True G765766
TU871883 lncRNA upstream 173485 5816587 ~ 5821603 (-) True G765855
TU871944 lncRNA upstream 258544 5901646 ~ 5901971 (-) True G765916
TU871945 lncRNA upstream 265553 5908655 ~ 5909176 (-) True G765917
XM_036987155.1 mRNA downstream 395065 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 395138 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 400880 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 400881 5194243 ~ 5241806 (-) False LOC110511386
XM_036987157.1 mRNA downstream 400882 5194243 ~ 5241805 (-) False LOC110511386
XM_036989236.1 mRNA upstream 170321 5813423 ~ 5813875 (-) True LOC118966152
XM_036987185.1 mRNA upstream 339670 5982772 ~ 6024749 (-) True LOC110531356
XM_036987177.1 mRNA upstream 423394 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 423394 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 423394 6066496 ~ 6190414 (-) False exoc6b
TU871540 other downstream 344250 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 585365 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 1066815 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 1106608 4446327 ~ 4536079 (-) False G765100
TU872873 other upstream 558267 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 558267 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 608495 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 697519 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 697519 6340621 ~ 6365528 (-) False G766665

Expression Profile