RNA id: TU872805


Basic Information

Item Value
RNA id TU872805
length 446
lncRNA type sense_over
GC content 0.48
exon number 2
gene id G766545
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6021169 ~ 6066022 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggataACAGTCTTAGCCTTGGCCTCATATCGGCGCCAGCCTTTACCCTCAACTCACTGTTATATTTTACTGCTCACCAAGGAAAGCCTGTCTTCAACAtgccactctgtgtgtgtgtgtgtgtgtggaaatagAGTATGCAGATTTGAATAATCAAGACAAGTCAGTCAATGCACAGTGGTCATTCTGTAGTCCCTAGCATGTTTGTGCATCTCTGCgtctgcgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcatttgattGGCATATTTCAATCACATCAGAAGAGAAACCGTGCACCTCCAGCCAAACTCCCTTCACTTCTCATTTACTTCGAGGGAAACGTCCTGATGGTTAGTTCTACCGCTCTGCCAAGGTTAACGGGAgacgggtgtgtgtgtctgctaccGTGCAAGCTCCCGGTAAATCGATCCgctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU872795 lncRNA downstream 41519 5979198 ~ 5979650 (-) True G766541
TU872785 lncRNA downstream 59008 5960803 ~ 5962161 (-) True G766533
TU871958 lncRNA downstream 99087 5921543 ~ 5922082 (-) True G765930
TU871952 lncRNA downstream 104848 5916029 ~ 5916321 (-) True G765924
TU871948 lncRNA downstream 108355 5912428 ~ 5912814 (-) True G765920
TU872797 lncRNA upstream 162 6066184 ~ 6105347 (-) True exoc6b
TU872845 lncRNA upstream 1592 6067614 ~ 6068038 (-) True G766574
TU872847 lncRNA upstream 16957 6082979 ~ 6196404 (-) True G766576
TU872851 lncRNA upstream 21886 6087908 ~ 6088402 (-) True G766578
TU872854 lncRNA upstream 30698 6096720 ~ 6098663 (-) True G766580
XM_036989236.1 mRNA downstream 207294 5813423 ~ 5813875 (-) True LOC118966152
XM_036987155.1 mRNA downstream 773547 5194243 ~ 5247622 (-) False LOC110511386
XM_036987154.1 mRNA downstream 773620 5194243 ~ 5247549 (-) False LOC110511386
XM_036987160.1 mRNA downstream 779362 5197614 ~ 5241807 (-) True LOC110511386
XM_036987159.1 mRNA downstream 779363 5194243 ~ 5241806 (-) False LOC110511386
XM_036987177.1 mRNA upstream 474 6066496 ~ 6190414 (-) False exoc6b
XM_036987178.1 mRNA upstream 474 6066496 ~ 6190414 (-) False exoc6b
XM_036987179.1 mRNA upstream 474 6066496 ~ 6190414 (-) False exoc6b
XM_036987180.1 mRNA upstream 474 6066496 ~ 6190414 (-) False exoc6b
XM_036987184.1 mRNA upstream 199309 6265331 ~ 6287151 (-) False rcor2
TU871540 other downstream 722732 5297476 ~ 5298437 (-) True G765579
TU871235 other downstream 963847 5055480 ~ 5057322 (-) True G765347
TU870895 other downstream 1445297 4574845 ~ 4575872 (-) True LOC110515555
TU870890 other downstream 1485090 4446327 ~ 4536079 (-) False G765100
TU872873 other upstream 135347 6201369 ~ 6202730 (-) False G766599
TU872875 other upstream 135347 6201369 ~ 6209209 (-) False G766599
TU872926 other upstream 185575 6251597 ~ 6256628 (-) True G766640
TU872969 other upstream 274599 6340621 ~ 6362814 (-) False G766665
TU872974 other upstream 274599 6340621 ~ 6365528 (-) False G766665

Expression Profile