RNA id: TU873104



Basic Information


Item Value
RNA id TU873104
length 722
lncRNA type antisense_over
GC content 0.49
exon number 2
gene id G766755
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6467684 ~ 6468475 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatggagggagatggatggagagagatggagggagatggatggagagagatagagggagatggatggagagagatggagggagatggatggagagagatggaaggagatggatggagagagatggagggagatggatggaatTAGAGATATATGGAGAGGTAGGGGAGGGATGGCGGAAAAGTGAAGGACAGAAAGAGTGGAGGAAGGATTAGAGAGGTATATCTGCGGAGATCATGGAGGTCATACAGACTTAGAGATTGGGCATTATAGGTTAGAGGTCAGgcattaggggttaggggttaggcgTTAGAGGTCAAGGGTTAGGCTTTAGAGGTCACGGTTTAGGGGTTAGgcgttagaggtcaggggttagaagTCAGGTGTTAGGCGTTAGAGGTCACGGTTTAGGGGTTAGgcgttagaggtcaggggttagaggtcaggggttaggcgTTAGagatcaggggttagaggtcactcACTGGTTCCAGTGCTCCTTGGAGACTCTGTAGAGTGTAGTGAAGACCAGCGGTAGAATCACCTGACTGTTCTCCTCTATCAAAGACAGGATGTACTCATTGTTCCAGAAGTACAGAGCCCTCTCTGCTACCTACAACACAGAGAGGTTAAAGTTTAGAGGTTAGGGTTCAGAGCCCTCCCTGCTACCTACAACACAGAGAGGTTAAAGTTTAGAGGTTAGGTTACTAACCtggaagtaagt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU873097 lncRNA downstream 3582 6457203 ~ 6464102 (-) False G766749
TU873081 lncRNA downstream 35033 6432298 ~ 6432651 (-) True G766735
TU873047 lncRNA downstream 56393 6411051 ~ 6411291 (-) True G766725
TU873026 lncRNA downstream 60411 6406656 ~ 6407273 (-) True G766707
TU873045 lncRNA downstream 62418 6404991 ~ 6405266 (-) True G766723
TU873116 lncRNA upstream 32849 6501324 ~ 6502245 (-) True LOC110532903
TU873123 lncRNA upstream 36087 6504562 ~ 6504893 (-) True G766768
TU873141 lncRNA upstream 59402 6527877 ~ 6528679 (-) True G766783
TU873019 lncRNA upstream 61565 6530040 ~ 6533107 (-) True G766701
TU873220 lncRNA upstream 161964 6630439 ~ 6631134 (-) True G766858
NM_001165251.2 mRNA downstream 58116 6407522 ~ 6409568 (-) True arl2
XR_005053472.1 mRNA downstream 104632 6362989 ~ 6363052 (-) True LOC118966206
XR_005053475.1 mRNA downstream 105116 6362505 ~ 6362568 (-) True LOC118966209
XR_005053478.1 mRNA downstream 105436 6362177 ~ 6362248 (-) True LOC118966212
XR_005053493.1 mRNA downstream 105836 6361722 ~ 6361848 (-) True LOC118966234
XM_036987194.1 mRNA upstream 13156 6481631 ~ 6490957 (-) True gpha2
XM_036987191.1 mRNA upstream 32287 6500762 ~ 6525335 (-) False LOC110532903
XM_036987193.1 mRNA upstream 64688 6533163 ~ 6535751 (-) True badb
XM_036987197.1 mRNA upstream 216179 6684654 ~ 6834904 (-) False LOC110510780
XM_036987201.1 mRNA upstream 382722 6851197 ~ 6863016 (-) False LOC110531366
TU873098 other downstream 3053 6457203 ~ 6464631 (-) True G766749
TU872974 other downstream 102156 6340621 ~ 6365528 (-) False G766665
TU872970 other downstream 102586 6358150 ~ 6365098 (-) False G766665
TU872969 other downstream 104870 6340621 ~ 6362814 (-) False G766665
TU872926 other downstream 211056 6251597 ~ 6256628 (-) True G766640
TU873212 other upstream 143604 6612079 ~ 6613412 (-) True G766850
TU873185 other upstream 404361 6872836 ~ 6882118 (-) True LOC110531366
TU873176 other upstream 496979 6965454 ~ 6969691 (-) True LOC110531380
TU873506 other upstream 777169 7245644 ~ 7251075 (-) True G767056
TU874434 other upstream 1644113 8112588 ~ 8114070 (-) True LOC110510419

Expression Profile