RNA id: TU873019


Basic Information

Item Value
RNA id TU873019
length 2986
lncRNA type antisense_over
GC content 0.44
exon number 2
gene id G766701
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 6530040 ~ 6533107 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tggaaggagggggggagagacagaggatggagagagggatgggccTACCAAGAGACAGAACCCACCCGTAATCGTACCACTATTGAACCACGGTCATCAGAGTACAGAGAAGGggatgtttcccatgccaataaagccccttgaattgaaattgggagagaaaaagagggggacAGAAGATGgattgagaaagggagagatgggccTCCCTGTTCTCAGCTGCTACTGACCCACAATCAGCAAagtgtagagatggatagtgggagagacaggagagagggatgggggagaggaaggaaagagacagatggatggagggagaggaaagagagacaggagagggggatggagagagatggatagtgGGAGAGGAAGGTGTTTCGCGGAAGGAGACAGTAATAAATAAAAGGTAAATCAAAATAAAGTAGAGGGTGgagaggtagaaggagacagATAAAATGGGACTAAAAGAGGTGGATGAGACCTTACCCATACAAGAACAACTAGTTTGCCAGCAAGAAATAGATTTAACTTCACTCTAGTGAAAGCATCCACCCAAAGCCCAAGCAGGCCTTTAGTTAATCATTTGGACTGTTTCTCCCATTAACACTATGCAACACTGAGAGTCCAGACAACATGCACTGAGACAAAACAAAATGGAGGTTGGGTTCTCTCATAAACTCTTCTCCACCTCAATTAATCTCTCCTTGTTTCCTCGTATCCTATTTCCTCCTCAACCGTACtggtccctccattcctcctgaccTTCTTCTCCAATGCATTTTTAGAAGAACACGAGGTGCGGTGGGGTAAGGAATCAAGGAAAGATGGATTGAGAATGAGTGTTAATGTGGttgtgtatcccaaatggcaccctattccccacaggccctggtcaaaagtagtgcactatatagggaatagggtgccataggccctggtcaaaagtagtgcactatatagggaaccgggtgccatttgggacagagaccGTGTGGTAGTTAGCAACCACAACCACCGCCATCTTAGAGTGATGGCTGCACTCCGACAACTAGCCCCATTTCAAAAATAAATGTCTCAAATATGAAGAACCATCTTGTTTAAATGACAATCTTTGATAGCAGTGCTAATGATATGTTTTGTATTAAACAAGAACTGCAGGGGAACCTTTTTATCAGACAATAGAAATGAATTGAACTAAGCTGTAGACTTTCAGAGCAAAACCAATGAGAATTAAAGACTTGGGTCTTTAAAAACTGTAAATACTGTTAATATTGCAATGAAtgaaactttaaaaaaaataatggacAATAACATGTAAACTGCTGAACaacaaaatgtgattttttttattaatgTTACTATGTATTGTCCCAagtggtaccctgttccctatacagtgcactacttctgaccagggcctatatagggaatagggtgccatttgagatgaatCCCCTCTGTAAGcttgtcttcttttttttttctacttAGAGGTGCTACTGCAAGGTCTTCCGTTGCAGCCCAAATCAACCCCCTACACTTCCAGGCGGTCCCAATTCATTCCCTACCCCCTCGATGTTAGGGGCTGGATAGGTATATAGCAGTGCGGGTGGttgacctttaaaaaaaaaatccatatctGTAAACATTGAATGGTTAGAgctcgggctcccgagtggcgcagcggtctaaggcactgcatctcagtgctagaggcgtcaccaaagacaccctggtttgattccaggctgtatcacaaccggctgtgattgggagtcccaaagggtggcgcacagttggcccagcgtcgtccgggtttggcctggggGGGTAGGCCGtaattataaataagaatttgttcttaactgacttgcctagttaaataaaggttcagtgTTTTATTCAGATCAATCcgtctttatagtgcactactcctgattagggggtaggggttgatttgggattcagCAGTAGCTTCAATGATCTGCCTTTCTGTACGAGTCCAGGCCTTTCTCTGTGACTGGGCCATGGCTGCCAgcactacctacctacctaccgccTTAGGCCCCGGGCTCAGTCACACGGCAGAGAAGCACAAACACGCCGGGTATGTCCCGCATCACAACGTTGGCAAAACTCTGCAACGGTATGTAGAGGAATCCTTCTCAACAGACAGCTTGTCACACACTACTGGTGCCTGCAGCACACGGGCTGTGTTCTAGATCACAACGTTGCTAAACTAATCTCTGcagttgtgtatatatatatatataaagtgtttatcaacaacaacaaaacgttGGTCGGTAAATCTGTGGAACATCTGTTCTTTCCCCATTTCACAAGCCTTTCCTtgcaaggtttttttttttttttattctgccTTTTAAACCTGTATTTGTTTTTAAACCGTTTTTAACTTGGTTTGTGCAACGTTTTGTGGTGTTGAACGTATCCTGTTAAAACCGGACTGGACTCGAGTCTAGATAGAATTGTGCAAAGGGAAGCTTGCCTTGCGGTCTTCTCttgcttgcgtcccaaatggcaccctatagggaatagggttccatttggtattctctatagggaatagggttccatttggtattctctatagggaatagggttccatttggtattctctatagggaatagggttccatttggtatTCTctatggaatagggttccatttgggatattttaaggaatagggttccatttggtattctctatagggaatagggttccatttggtatTCTCTATAGGGAATCGGGTTCCATTTGGTAttctctatagggaataggattccatttgggaCTCAATCTCTGGTATTACTTGAAACttgatgtgtatggggggggAAATCTTGAATACTTTTGCTTTCTTTTTCTACAAAAttacttttgtaaatgtattttctTTGTGTGACCACTTGGTGTACTATGGGCATaagtaaacaaataaacaaatcatTTTTACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU873141 lncRNA downstream 1361 6527877 ~ 6528679 (-) True G766783
TU873123 lncRNA downstream 25147 6504562 ~ 6504893 (-) True G766768
TU873116 lncRNA downstream 27795 6501324 ~ 6502245 (-) True LOC110532903
TU873104 lncRNA downstream 61565 6467684 ~ 6468475 (-) True G766755
TU873097 lncRNA downstream 65938 6457203 ~ 6464102 (-) False G766749
TU873220 lncRNA upstream 97332 6630439 ~ 6631134 (-) True G766858
TU873193 lncRNA upstream 102919 6636026 ~ 6730805 (-) True LOC110510780
TU873234 lncRNA upstream 135458 6668565 ~ 6668820 (-) True G766870
TU873240 lncRNA upstream 138503 6671610 ~ 6672837 (-) True G766874
TU873192 lncRNA upstream 149637 6682744 ~ 6728761 (-) True G766832
XM_036987191.1 mRNA downstream 4705 6500762 ~ 6525335 (-) False LOC110532903
XM_036987194.1 mRNA downstream 39083 6481631 ~ 6490957 (-) True gpha2
NM_001165251.2 mRNA downstream 120472 6407522 ~ 6409568 (-) True arl2
XR_005053472.1 mRNA downstream 166988 6362989 ~ 6363052 (-) True LOC118966206
XR_005053475.1 mRNA downstream 167472 6362505 ~ 6362568 (-) True LOC118966209
XM_036987193.1 mRNA upstream 56 6533163 ~ 6535751 (-) True badb
XM_036987197.1 mRNA upstream 151547 6684654 ~ 6834904 (-) False LOC110510780
XM_036987201.1 mRNA upstream 318090 6851197 ~ 6863016 (-) False LOC110531366
XM_036987203.1 mRNA upstream 318090 6851197 ~ 6882912 (-) False LOC110531366
XM_036987200.1 mRNA upstream 338165 6871272 ~ 6882253 (-) False LOC110531366
TU873098 other downstream 65409 6457203 ~ 6464631 (-) True G766749
TU872974 other downstream 164512 6340621 ~ 6365528 (-) False G766665
TU872970 other downstream 164942 6358150 ~ 6365098 (-) False G766665
TU872969 other downstream 167226 6340621 ~ 6362814 (-) False G766665
TU872926 other downstream 273412 6251597 ~ 6256628 (-) True G766640
TU873212 other upstream 78972 6612079 ~ 6613412 (-) True G766850
TU873185 other upstream 339729 6872836 ~ 6882118 (-) True LOC110531366
TU873176 other upstream 432347 6965454 ~ 6969691 (-) True LOC110531380
TU873506 other upstream 712537 7245644 ~ 7251075 (-) True G767056
TU874434 other upstream 1579481 8112588 ~ 8114070 (-) True LOC110510419

Expression Profile