RNA id: TU874085


Basic Information

Item Value
RNA id TU874085
length 3974
lncRNA type intronic
GC content 0.47
exon number 2
gene id G767461
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7328900 ~ 7332927 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGAGAATAGAATGTTCCCTCTACTCCTCTTTCAGTTGAAGGGGAATAGAATGTTCCGTCTACTTCTGTCTTTCAGTTGAAGGAGAATGgaactctccttctccctttgttccatGGAAGACAAAATAAAAAGCAGATTCTCTGTTGTGTCTCCAGCATCCTGTCTGTCTTGCCCTCCACTCCTCTGACTTCAGAGAGCAGATCCTAAactgtccatctctcctcttcctacgCATCCGTTCTTCTAGGCtttgtcccaaaaggcaccctgttccctttacagTGGCTAGCCTCTTCGCTCTGGGAGACCTGGAACTTTACACACTGATCTCCCGTACCCCTAAAAACATATTTACCAGCCCTCTCTCTAGTTGACCTAAATAATGTgtgaaaataaacatttatttccaACTTTTCCTGAGTTGACCGAATTCACACCATATCTCCCTAAAAAGTGGTGTGCTGCCATCTGGGATCAGGCGgtaatctatactgaacaacaatatgaACGCAACATACAAAGCTTCCAacgatttgactgagttacagttcatatgaggaaaccAGTCAATTGAATCAAATTcatcaggccctaatctatggatatcacatgactgggaatatacatatgcatctgttggtcagagatatcctttaaaaaaaggtagaggcgtggatcagaaaaccagccagtatctggtgtgaccatttgcctcatgcagcgcgacacgtCTCCTTCACATAGGgttgatcaagctgttgattgtggactgtggaatgttgtcccactcctcttccatGGCTGAGTGAAgtggctggatattggcgggaactggaacacgctgtcgtacttgtcgatccagagcatcccaaacatgctcaacgggtgacatgtctggtgagtatgcagaccatggaagaactgggacattttcagcttccaggaatcgtgtacagatccttgagatATGGGGCCGTGTGCATTATTACGCTGAAACATGAGgggatggcggcagatgaatggcaacaacaatgggcatcaggatctcatcactgtatctctgtgcattcaaattgccaaagataaaatcaaattgtgttcgttgtccgtagctcataccataaccccaccgccaccatgttgcactatgttcacaatgttgacatcaacaaaccgctcacccacacgacccCATACACGCTGTGTACCATCTgtctggtacagttgaaactgggattcatccgtgaagagcacacttctccagcgtgccagtggccatcaaaggtgagcttTTGCCCTCTGAAGTCGGtgacgacgccaaactgcagtcagatcaagaccctggtgaggaagacgagcagatgagcttccctgagagtttgtgcagaaattatttggttgtgcaaacccacagtttcatcagttgtcttGGAGGCaacccgcaggtgaagaagtcggatgtggaggtcctgggttggcgtggttacatgtggtctacggttttgaggccggttgaaagtactgccaaattctctaaaatgtcgttggaggcggcttatggtagaaaaagcAACATTGAATTCcttggcaaaagctctggtggacattcctgcagtcagcatgccaattgcacgctccctcaaaacttgagtcgTGGCATTgtcttgtgtgacaaaacagcacattttagagtggccttttattgaacccagcacaaggtccacccatgtaatgattatgctgtttaatcagcttcttgatatgccacacctgtcaggtggatggattatcttggcaaagaagaaaggctcactaacaggggatgtaaacaaatttgtgcacaacatttgagagaagtcAGCCTTttatgcgtatggaacatttctgggatcttttctttcagctcatgaaacatgggaccaacactttacacgttgcgtttatattttttgttcagtgtagcgtTGGAAATTATTACATGTCAATTGTTTATTTTGACCACAGCTCACACACTGTATAGCCCAAAACGACTGGTAAGGCATCCCGGATTCTAGATTTGCCAATAGGtcaaccagaggtctgtttaaatgTGTTTTTCGGGGTACTGGGATGTCGCCGTCAGCAACGAGAGATCTATGTGCAGTATAGGTCTCCCAGAGAGAAGAGCActaactagggaatagggtgcatctATCCTTCTATAGAGCCTCCCACAGTATCCTACAGCAtcctacagtatcctacagtatCCTACAGCATCCTACACTATTCTACAGCATCCTACAGCATCCTACGGTATCTTACAGTATCCTACAGCAtcctacagtatcatacagtattcTACAGCAtcctacagtatcctacagtatCCTAGAGCATCCTACAGTATCCTACGGTATCCTACAGTATCCTACAGCATCCTACGGCCTCCCACAGTATCCTACAGTATTCTACAGCATCCTACAGCATCCTACAGCATCCTACGGTATCCTACAGTATCCTACAGCAACCTACAGTATCCTACAGCCTCCCACGATATCCTACAGTATCCTACAGCATCCTACGGTATCCTACAGCCTCCCACGATATCCTACAGTATCCTACAGCATCCTACGGTATCCTACAGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatactacagtatccTACGGTATCCTACGGTATCCTACGGCATCCTACGGTATCCTACAGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatACTACGGTATCCTACGGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatACTACGGTATCCTACGGTATCCTACAGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACGGTATCCTACATCATCCTACGGTAtcctacagtatcctacagtatCCTAGCATAGATATCTGGAAAACAAACATTCCAATGTGCAGTCAACGGCCTTCCGCTTAAGACTACTCTCTCACtccactctcactcactctctgtctttctctctctcactccaagcctctctccacccccccctctctctgtctttctttctctcactccaaGCCTCTCTCCAgccctttttttctccctccctcttctcctcttcctacatccctatctctctccaccccccgctctctctgtctttctcgctctcactcagcctcgcctctctctctctcgtctctctgtctttctctctctctcactcagcctcgcctctctcgtctctctgtctttctctctctctcactcagcctcgcctctctctctctcgtctctgtctttctctctctctcactcagcctcgcctctctctctctcgtctctctgtctttctctctctctctgcctctctctctctgcctctctctctcactccaagcctctctccatccctttcttactccctccctcttctcctcttcctacatccctccccccacccccccccccctctctcataccAATATCTTCCCTTTCTCTCAGTTGATTTACATCTCTTTCTTGTCCTGTACTACAATATCCCCTCCTTTCCACTGTCTCTCAGACAACCATTCTTTTCTGTCAGTCTACTATTGTGTCCATCACGTCATCTCCACCGTGGCAGCTCTCCTCTCCGTGTACGATCAACACCGGGAAGAAAAACGCATCGTGGTAAGACGGAGGCCTATCCCTCACCCCCTCATCCACCTCTCCTCCGCCCTCCTGCTCttcttcct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874063 lncRNA downstream 32841 7295671 ~ 7296059 (-) True G767445
TU874048 lncRNA downstream 47664 7280920 ~ 7281236 (-) True G767434
TU873496 lncRNA downstream 111529 7217045 ~ 7217371 (-) True G767047
TU873433 lncRNA downstream 121416 7206415 ~ 7207484 (-) False G767001
TU874079 lncRNA upstream 3823 7336750 ~ 7337789 (-) True G767460
TU874087 lncRNA upstream 5828 7338755 ~ 7339130 (-) True G767463
TU874092 lncRNA upstream 10004 7342931 ~ 7343147 (-) True G767468
TU874025 lncRNA upstream 48628 7381555 ~ 7383075 (-) False G767420
TU874027 lncRNA upstream 48628 7381555 ~ 7383075 (-) False G767420
XM_036989271.1 mRNA downstream 254149 7071957 ~ 7074751 (-) True LOC118966172
XM_021614564.2 mRNA downstream 257781 7068527 ~ 7071119 (-) True LOC110531373
XM_021614570.2 mRNA downstream 263707 7054835 ~ 7065193 (-) True LOC110531378
XM_036989240.1 mRNA downstream 274645 6970858 ~ 7054255 (-) False LOC110531367
XM_036987205.1 mRNA downstream 359044 6963143 ~ 6969856 (-) False LOC110531380
XM_036987213.1 mRNA upstream 27982 7360909 ~ 7379030 (-) False tmem179ba
XR_005053157.1 mRNA upstream 27982 7360909 ~ 7379030 (-) False tmem179ba
XM_036987215.1 mRNA upstream 27982 7360909 ~ 7379032 (-) False tmem179ba
XR_005053158.1 mRNA upstream 27982 7360909 ~ 7379032 (-) True tmem179ba
XM_036987216.1 mRNA upstream 50422 7383349 ~ 7390542 (-) False prox3
TU873506 other downstream 77825 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 359209 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 446782 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 715488 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 864269 6457203 ~ 6464631 (-) True G766749
TU874434 other upstream 779661 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 856516 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 888604 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 945890 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 1649541 8982468 ~ 8990706 (-) False G768780

Expression Profile