RNA id: TU874255


Basic Information

Item Value
RNA id TU874255
length 1584
lncRNA type intronic
GC content 0.34
exon number 2
gene id G767608
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 7724516 ~ 7726398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtctgttatctgtctgttctatagatactgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttctatagatactgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttatgtctgttacctgtctgttctatagatactagatactgtctgttacctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctacagatactagatactgtctgttatctgtctgttatctgtctgttctacagatactagatactgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctatagatactagataatgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttctatagatactagatactgtctgttatctgtctgttatctgtctgttatctgtctgttctatagatactagattctgtctgttatctgtctgttctatagataatagatactgtatgttatctgtctgttctatagatactagaaactgtctgttatctgtctgttctatagatactagatactgtatgttatctgtctgttatgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttatctgtctgttctatagaaactagatactgtctgttatctgtctgttctatagatactagatacggtctgttatctgtctgttctatagatactagttactgtctgttatctgtctgttctatagatactagttattgtctgttatctgtctgttatctgtctgttatctgtctgttctatagatactagattctgtctgttatctgtctgttctatagataatagatactgtatgttatctgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874245 lncRNA downstream 20381 7703650 ~ 7704135 (-) True G767600
TU874203 lncRNA downstream 113700 7609190 ~ 7610816 (-) True G767562
TU874185 lncRNA downstream 138091 7586028 ~ 7586425 (-) True G767547
TU874149 lncRNA downstream 206726 7515235 ~ 7517790 (-) False G767516
TU874261 lncRNA upstream 15409 7741807 ~ 7742311 (-) True G767614
TU874264 lncRNA upstream 20605 7747003 ~ 7747980 (-) True G767616
TU874301 lncRNA upstream 53402 7779800 ~ 7780176 (-) True G767635
TU874302 lncRNA upstream 61422 7787820 ~ 7789304 (-) True G767636
TU874277 lncRNA upstream 73483 7799881 ~ 7802915 (-) False G767625
XM_036987218.1 mRNA downstream 297713 7407293 ~ 7426803 (-) True snx15
XM_036987217.1 mRNA downstream 333973 7383349 ~ 7390543 (-) False prox3
XM_036987216.1 mRNA downstream 333974 7383349 ~ 7390542 (-) False prox3
XM_036987215.1 mRNA downstream 345484 7360909 ~ 7379032 (-) False tmem179ba
XM_036987223.1 mRNA upstream 79103 7805501 ~ 7873725 (-) False LOC110515519
LOC118965986 mRNA upstream 334186 8060584 ~ 8061856 (-) True LOC118965986
XM_036987244.1 mRNA upstream 335828 8062226 ~ 8064024 (-) True LOC118965984
LOC118965983 mRNA upstream 339902 8066300 ~ 8067723 (-) True LOC118965983
XM_036987245.1 mRNA upstream 341429 8067827 ~ 8069224 (-) True LOC118965985
TU873506 other downstream 473441 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 754825 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 842398 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 1111104 6612079 ~ 6613412 (-) True G766850
TU873098 other downstream 1259885 6457203 ~ 6464631 (-) True G766749
TU874434 other upstream 386190 8112588 ~ 8114070 (-) True LOC110510419
TU875250 other upstream 463045 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 495133 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 552419 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 1256070 8982468 ~ 8990706 (-) False G768780

Expression Profile