RNA id: TU874496


Basic Information

Item Value
RNA id TU874496
length 283
lncRNA type intronic
GC content 0.35
exon number 2
gene id G767792
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8149213 ~ 8151058 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gggtaaagtgactaggcatcaggatagataataataaggtatttgaggtagatatgtacataaaggcagggtaaagtgactagacatcaggatagataataataaggtatttgaggtagatatgtacatgaagacagggtaaagtgactagacatcaggatagataataataaggtatttgaggtagatatgtacatgaagacagggtaaagtgactagacatcaggatagataataataaggtatttgaggtagatatgtacatgaagacagggtaaagtga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874486 lncRNA downstream 16859 8131412 ~ 8132354 (-) True G767783
TU874445 lncRNA downstream 33721 8115146 ~ 8115492 (-) True G767753
TU874433 lncRNA downstream 35143 8112588 ~ 8114070 (-) False LOC110510419
TU874444 lncRNA downstream 80227 8061337 ~ 8068986 (-) True G767752
TU874461 lncRNA downstream 93708 8055263 ~ 8055505 (-) True G767766
TU874504 lncRNA upstream 12218 8163276 ~ 8163877 (-) True G767800
TU874507 lncRNA upstream 13222 8164280 ~ 8172506 (-) False G767803
TU874508 lncRNA upstream 17030 8168088 ~ 8172506 (-) True G767803
TU875242 lncRNA upstream 21895 8172953 ~ 8173413 (-) True G768383
TU875244 lncRNA upstream 29660 8180718 ~ 8180958 (-) True G768385
XM_036987243.1 mRNA downstream 38647 8083612 ~ 8110566 (-) True brms1
XM_036987245.1 mRNA downstream 79989 8067827 ~ 8069224 (-) True LOC118965985
LOC118965983 mRNA downstream 81490 8066300 ~ 8067723 (-) True LOC118965983
XM_036987244.1 mRNA downstream 85189 8062226 ~ 8064024 (-) True LOC118965984
LOC118965986 mRNA downstream 87357 8060584 ~ 8061856 (-) True LOC118965986
XM_036987246.1 mRNA upstream 70473 8221531 ~ 8253809 (-) False LOC118936684
XM_036987232.1 mRNA upstream 103737 8254795 ~ 8265001 (-) False krcp
XM_036987231.1 mRNA upstream 103737 8254795 ~ 8265108 (-) False krcp
XM_036987229.1 mRNA upstream 103737 8254795 ~ 8266597 (-) False krcp
XM_036987230.1 mRNA upstream 103737 8254795 ~ 8266598 (-) True krcp
TU874434 other downstream 35143 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 898138 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1179522 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 1267095 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 1535801 6612079 ~ 6613412 (-) True G766850
TU875250 other upstream 38385 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 70473 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 127759 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 831410 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 831410 8982468 ~ 8990706 (-) True G768780

Expression Profile