RNA id: TU874504


Basic Information

Item Value
RNA id TU874504
length 602
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G767800
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8163276 ~ 8163877 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctcgtttgtgggtgagtcccagaaagagggcaattatctacaaattctatcttttgggaggggcagaaaacagttttcaaccagcgattgagttgtgagacactgctgtagagctcatcactccccctaactgggagggggacagagacaattactcgatgccgacacatctttctagctgatttacacgctgaagctatgttgcacttggtgacctctgactgtttcatcctaacatcgttggggccgacgtggataacaatatccctatactctctacactggccagatttagccagcaccatcttcagatcaGCCTTAACgttggtagccctgccccctggtaaacagtgtatgatcactggatgatatggggcggcagggtagcctagtggttagagcgttggactagtaaccaaaaggttgtaagttcaaatccccgagcttaTAGCATATTAATTTTATTATTTACACAAAGGAATGTTCACAATCGAAACAAAGTCTCCGGTTCTACTTCCGTGTTTTGGATTCTTCTTTTATGGTTAATAACACAGGCTGGCTAACCCGGAAACGCACAACAGCGCCACCAGCTGGATTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874496 lncRNA downstream 12218 8149213 ~ 8151058 (-) True G767792
TU874486 lncRNA downstream 30922 8131412 ~ 8132354 (-) True G767783
TU874445 lncRNA downstream 47784 8115146 ~ 8115492 (-) True G767753
TU874433 lncRNA downstream 49206 8112588 ~ 8114070 (-) False LOC110510419
TU874444 lncRNA downstream 94290 8061337 ~ 8068986 (-) True G767752
TU874507 lncRNA upstream 403 8164280 ~ 8172506 (-) False G767803
TU874508 lncRNA upstream 4211 8168088 ~ 8172506 (-) True G767803
TU875242 lncRNA upstream 9076 8172953 ~ 8173413 (-) True G768383
TU875244 lncRNA upstream 16841 8180718 ~ 8180958 (-) True G768385
TU875246 lncRNA upstream 18372 8182249 ~ 8182465 (-) True G768387
XM_036987247.1 mRNA downstream 7360 8113636 ~ 8155916 (-) False LOC110510419
XM_036987243.1 mRNA downstream 52710 8083612 ~ 8110566 (-) True brms1
XM_036987245.1 mRNA downstream 94052 8067827 ~ 8069224 (-) True LOC118965985
LOC118965983 mRNA downstream 95553 8066300 ~ 8067723 (-) True LOC118965983
XM_036987244.1 mRNA downstream 99252 8062226 ~ 8064024 (-) True LOC118965984
XM_036987246.1 mRNA upstream 57654 8221531 ~ 8253809 (-) False LOC118936684
XM_036987232.1 mRNA upstream 90918 8254795 ~ 8265001 (-) False krcp
XM_036987231.1 mRNA upstream 90918 8254795 ~ 8265108 (-) False krcp
XM_036987229.1 mRNA upstream 90918 8254795 ~ 8266597 (-) False krcp
XM_036987230.1 mRNA upstream 90918 8254795 ~ 8266598 (-) True krcp
TU874434 other downstream 49206 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 912201 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1193585 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 1281158 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 1549864 6612079 ~ 6613412 (-) True G766850
TU875250 other upstream 25566 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 57654 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 114940 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 818591 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 818591 8982468 ~ 8990706 (-) True G768780

Expression Profile