RNA id: TU875242


Basic Information

Item Value
RNA id TU875242
length 461
lncRNA type antisense_over
GC content 0.38
exon number 1
gene id G768383
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8172953 ~ 8173413 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTAACATTAAAACTAATTAAAAAGAATAATTCTTAAAATTGTTGAAATGGTGATCTCTTACAAGTTTCATTAATTGAGTAGAACTATAGCTAGCTATAGGTATAATTTAATACGTTTACGAACCTGTTCTACATAGTTTTATCTCCGGTGTGATCCGCAGCAGTCTCCGTAGCCGATCATTCTCCTCCTGGTACTCCACTACCGTTTTCTCAACTGCACCGAAAATATCCACATCAGCCGGCGTTAAACGATCATTTAAAAACACACTCAACAACTGTAGTTTAGACATTTTCAGTGGACTGGGTGTTTGGGTAGCCTATTTAGTTCAGTCGATATGTCTTTCTTTACTCCACAAAAGGAATACAAAACCAACAAACTCATCTCCAATCCTACTTCCGTGTTGTAGTGAAATCATTTTTTAGAAAACTCAATGGTCCTAGTGAGGGGTCAGCAGCGCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU874507 lncRNA downstream 447 8164280 ~ 8172506 (-) False G767803
TU874508 lncRNA downstream 447 8168088 ~ 8172506 (-) True G767803
TU874504 lncRNA downstream 9076 8163276 ~ 8163877 (-) True G767800
TU874496 lncRNA downstream 21895 8149213 ~ 8151058 (-) True G767792
TU874486 lncRNA downstream 40599 8131412 ~ 8132354 (-) True G767783
TU875244 lncRNA upstream 7305 8180718 ~ 8180958 (-) True G768385
TU875246 lncRNA upstream 8836 8182249 ~ 8182465 (-) True G768387
TU875247 lncRNA upstream 11159 8184572 ~ 8185004 (-) True G768388
TU875248 lncRNA upstream 14273 8187686 ~ 8188812 (-) True G768389
TU875251 lncRNA upstream 20290 8193703 ~ 8193909 (-) True G768391
XM_036987247.1 mRNA downstream 17037 8113636 ~ 8155916 (-) False LOC110510419
XM_036987243.1 mRNA downstream 62387 8083612 ~ 8110566 (-) True brms1
XM_036987245.1 mRNA downstream 103729 8067827 ~ 8069224 (-) True LOC118965985
LOC118965983 mRNA downstream 105230 8066300 ~ 8067723 (-) True LOC118965983
XM_036987244.1 mRNA downstream 108929 8062226 ~ 8064024 (-) True LOC118965984
XM_036987246.1 mRNA upstream 48118 8221531 ~ 8253809 (-) False LOC118936684
XM_036987232.1 mRNA upstream 81382 8254795 ~ 8265001 (-) False krcp
XM_036987231.1 mRNA upstream 81382 8254795 ~ 8265108 (-) False krcp
XM_036987229.1 mRNA upstream 81382 8254795 ~ 8266597 (-) False krcp
XM_036987230.1 mRNA upstream 81382 8254795 ~ 8266598 (-) True krcp
TU874434 other downstream 58883 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 921878 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1203262 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 1290835 6872836 ~ 6882118 (-) True LOC110531366
TU873212 other downstream 1559541 6612079 ~ 6613412 (-) True G766850
TU875250 other upstream 16030 8189443 ~ 8191898 (-) True G768390
TU875271 other upstream 48118 8221531 ~ 8252755 (-) True LOC118936684
TU875321 other upstream 105404 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 809055 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 809055 8982468 ~ 8990706 (-) True G768780

Expression Profile