RNA id: TU875276



Basic Information


Item Value
RNA id TU875276
length 557
lncRNA type intronic
GC content 0.38
exon number 2
gene id G768406
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8222864 ~ 8223571 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ctatacacactatacacacactatacacactatacacactatacacactatacacacactatacacactatacacacactatacacactatatacactacacacactatacacactatacacacactatacacactatacacacactatacacacactatacacacacgatacacactatacacacactatacacacactatacacactacacacactatgcacactacacacacaatacacactatacacacactatacacacactatacacacactacacacactacatacacactatacacacactacacactctacataCACTACACAAActatacacacaaaacacactatacacactacacaaacTACACATACTACATACAacataacacactacacacataccataacacactacacacacacaccataacacactatacacacacacacacacacacacaccataacacactacacacacataccataacacactacacacactcccacacacacacaccataacacactacacacacacaccataac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU875266 lncRNA downstream 1587 8220971 ~ 8221277 (-) False G768402
TU875277 lncRNA upstream 364 8223935 ~ 8225053 (-) True G768407
TU875290 lncRNA upstream 16699 8240270 ~ 8247410 (-) True G768414
TU875301 lncRNA upstream 52602 8276173 ~ 8276485 (-) True G768425
TU875323 lncRNA upstream 95750 8319321 ~ 8321009 (-) True LOC118965987
TU875372 lncRNA upstream 134684 8358255 ~ 8365890 (-) True G768483
XM_036987247.1 mRNA downstream 66948 8113636 ~ 8155916 (-) False LOC110510419
XM_036987243.1 mRNA downstream 112298 8083612 ~ 8110566 (-) True brms1
XM_036987245.1 mRNA downstream 153640 8067827 ~ 8069224 (-) True LOC118965985
LOC118965983 mRNA downstream 155141 8066300 ~ 8067723 (-) True LOC118965983
XM_036987244.1 mRNA downstream 158840 8062226 ~ 8064024 (-) True LOC118965984
XM_036987232.1 mRNA upstream 31224 8254795 ~ 8265001 (-) False krcp
XM_036987231.1 mRNA upstream 31224 8254795 ~ 8265108 (-) False krcp
XM_036987229.1 mRNA upstream 31224 8254795 ~ 8266597 (-) False krcp
XM_036987230.1 mRNA upstream 31224 8254795 ~ 8266598 (-) True krcp
XM_021614568.2 mRNA upstream 54311 8277882 ~ 8283359 (-) False LOC110531377
TU875250 other downstream 30966 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 108794 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 971789 7245644 ~ 7251075 (-) True G767056
TU873176 other downstream 1253173 6965454 ~ 6969691 (-) True LOC110531380
TU873185 other downstream 1340746 6872836 ~ 6882118 (-) True LOC110531366
TU875321 other upstream 55246 8278817 ~ 8283324 (-) True LOC110531377
TU875757 other upstream 758897 8982468 ~ 8990706 (-) False G768780
TU875758 other upstream 758897 8982468 ~ 8990706 (-) True G768780
TU877415 other upstream 2151138 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 2151138 10374709 ~ 10375854 (-) True G770225

Expression Profile