RNA id: TU875758


Basic Information

Item Value
RNA id TU875758
length 639
RNA type TUCP
GC content 0.49
exon number 2
gene id G768780
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 8982468 ~ 8990706 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAGTGGAAAAATTGTTTATTTGACAAGCTTAGTAGTAGGCCTTCACAGGCTACAAtgacatacagagacacagaaagtGATTTTTAATCAGCATGTAGCCTATTGAAGCCTACAACACTGAGTCAAAGACATTGACTTCAATCGGTCCCTTTATAGGCCCAGTGAAGCCAGAAAGGCTATGTACATCTCCTCCTTTCTGTATGTGCTTGTCCCTGTGGTTcagtgtagggtgaagttgctcCTAGATGCTGATCCTAGGTCAGTTTTGCATATTGTTTCattctaatggttaaggttaggatcagGGAAGGGGAAGCTGATCTTCGATCTGAAGGCTACCGAGCAGAAACTCGCTTACACCTGCCAGACTCAGAGCGCCATCATGTGGACAATATCGATATGGACATTTTATGGGTTCAggcagttgtgtgtctgtgtctatacGTCAGTGCTGTCTGTGGTCTCTCTGGCAGCCCATTGGCTATGACAGCGGATGTTCTGTTCCGGAGCCATGACTCGACCAGTAGGGATGCGGTATGCAGACAGGCTCCGCCCTGTCAGCAGCAGCATCAGTGTGGCGGTCAGAGTCGCTGCCCAACTGCATGCTGGGAGGCCCACCTGGAGGGGGGGTTGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875683 lncRNA downstream 675 8921960 ~ 8981793 (-) True G768725
TU875735 lncRNA downstream 31191 8950780 ~ 8951277 (-) True G768767
TU875722 lncRNA downstream 57196 8924908 ~ 8925272 (-) True G768755
TU875665 lncRNA downstream 59207 8921960 ~ 8923261 (-) False G768725
TU875763 lncRNA upstream 9793 9000499 ~ 9000776 (-) True G768785
TU875767 lncRNA upstream 12747 9003453 ~ 9004491 (-) True G768788
TU875789 lncRNA upstream 59186 9049892 ~ 9051345 (-) True G768810
TU875798 lncRNA upstream 89621 9080327 ~ 9080573 (-) True G768819
TU875800 lncRNA upstream 92541 9083247 ~ 9087335 (-) False leap2
LOC118966157 mRNA downstream 265130 8702038 ~ 8717338 (-) True LOC118966157
XM_036987251.1 mRNA downstream 297497 8639499 ~ 8684971 (-) False LOC110532904
XM_036987252.1 mRNA downstream 297497 8639499 ~ 8684971 (-) True LOC110532904
XM_036987250.1 mRNA downstream 297498 8639499 ~ 8684970 (-) False LOC110532904
XM_036987248.1 mRNA downstream 401892 8566556 ~ 8580576 (-) True nagk
XM_036987260.1 mRNA upstream 33007 9023713 ~ 9077362 (-) False phka1a
XM_036987258.1 mRNA upstream 33007 9023713 ~ 9077363 (-) False phka1a
XM_036987261.1 mRNA upstream 33007 9023713 ~ 9077363 (-) True phka1a
NM_001124464.1 mRNA upstream 92670 9083376 ~ 9087297 (-) False leap2
XM_021614611.2 mRNA upstream 113528 9104234 ~ 9107459 (-) True bmp15
TU875321 other downstream 699144 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 729713 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 790570 8189443 ~ 8191898 (-) True G768390
TU874434 other downstream 868398 8112588 ~ 8114070 (-) True LOC110510419
TU873506 other downstream 1731393 7245644 ~ 7251075 (-) True G767056
TU877415 other upstream 1384003 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 1384003 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 1981667 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 2117122 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 2637910 11628616 ~ 11629588 (-) True G771457