RNA id: TU875855


Basic Information

Item Value
RNA id TU875855
length 505
lncRNA type intronic
GC content 0.44
exon number 1
gene id G768868
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9183845 ~ 9184349 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTAAGACAGAGGAACactgacctagtcctgttgttacagtaagacagaggaacactgacctgttgttacagtaagacagaggaacactgacctgttgttACAGTAAGACAGAGGAACACTGACCTAGACCTGTTGTTACAGTAAGACAGAGGAACactgacctagtcctgttgttacagtaagacagaggaacactgacctgttgttacagtaagacagaggaacactgacctagtcctgttgttacagtaagacagaggaacactgacctgttgttacagtaagacagaggaacactgacctagtcctgttgttacagtaagacaaaggaacactgacctgttgttacagtaagacagaggaacactgacctgttgttacagtaagacagaggaacactgacctagtcctgttgttacagtaagacagaggaacactgacctgttgttacagtaagacagaggaacactgacctgttgttACAGTAAGACAGAGGAACACTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU875854 lncRNA downstream 30 9183470 ~ 9183815 (-) True G768867
TU875848 lncRNA downstream 2920 9180413 ~ 9180925 (-) True G768865
TU875844 lncRNA downstream 5032 9178560 ~ 9178813 (-) True G768863
TU875842 lncRNA downstream 9546 9174086 ~ 9174299 (-) True G768861
TU875802 lncRNA downstream 38141 9083247 ~ 9145704 (-) True leap2
TU875856 lncRNA upstream 641 9184990 ~ 9185444 (-) True G768869
TU875865 lncRNA upstream 15660 9200009 ~ 9201756 (-) True G768878
TU875886 lncRNA upstream 40235 9224584 ~ 9226836 (-) True G768893
TU875885 lncRNA upstream 44375 9228724 ~ 9229132 (-) True G768892
TU875887 lncRNA upstream 46528 9230877 ~ 9231132 (-) True G768894
XM_021614611.2 mRNA downstream 76386 9104234 ~ 9107459 (-) True bmp15
NM_001124464.1 mRNA downstream 96548 9083376 ~ 9087297 (-) False leap2
XM_036987258.1 mRNA downstream 106482 9023713 ~ 9077363 (-) False phka1a
XM_036987261.1 mRNA downstream 106482 9023713 ~ 9077363 (-) True phka1a
XM_036987260.1 mRNA downstream 106483 9023713 ~ 9077362 (-) False phka1a
XM_036987268.1 mRNA upstream 110415 9294764 ~ 9348258 (-) True LOC110531417
XM_021614628.2 mRNA upstream 799143 9983492 ~ 9988450 (-) True LOC110531429
XR_005053162.1 mRNA upstream 933411 10117760 ~ 10130445 (-) False LOC118965989
XR_005053163.1 mRNA upstream 951180 10135529 ~ 10137709 (-) True LOC118965990
XM_036987277.1 mRNA upstream 956274 10140623 ~ 10213284 (-) False LOC110531425
TU875757 other downstream 193139 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 193139 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 900521 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 931090 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 991947 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 1190360 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 1190360 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 1788024 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 1923479 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 2444267 11628616 ~ 11629588 (-) True G771457

Expression Profile