RNA id: TU877116



Basic Information


Item Value
RNA id TU877116
length 214
lncRNA type intronic
GC content 0.39
exon number 1
gene id G769983
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9707594 ~ 9707807 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tttatgtggtcatagtgatgtgactttaccgctttatgtggtcatagtgatgtgactttactgctttatgtggtcatagtgctgtgtgctgagactttactgctttatgtggtcatagtgatgtgactttactgctttatgtggtcatagtgctgtgactttactgatttatgtggtcatagtgatgtgactttactgctttatgtggtcatag

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU877075 lncRNA downstream 78148 9628771 ~ 9629446 (-) True G769945
TU877036 lncRNA downstream 157200 9550195 ~ 9550394 (-) True G769908
TU877035 lncRNA downstream 157454 9549863 ~ 9550140 (-) True G769907
TU876137 lncRNA downstream 168907 9531777 ~ 9538687 (-) True G769112
TU876116 lncRNA downstream 206431 9498030 ~ 9501163 (-) False G769097
TU877117 lncRNA upstream 16903 9724710 ~ 9725078 (-) True G769984
TU877118 lncRNA upstream 26377 9734184 ~ 9734387 (-) True G769985
TU877119 lncRNA upstream 29510 9737317 ~ 9737541 (-) True G769986
TU877120 lncRNA upstream 50663 9758470 ~ 9758677 (-) True G769987
TU877152 lncRNA upstream 127132 9834939 ~ 9835159 (-) True G770015
XM_036987268.1 mRNA downstream 359336 9294764 ~ 9348258 (-) True LOC110531417
XM_021614611.2 mRNA downstream 600135 9104234 ~ 9107459 (-) True bmp15
NM_001124464.1 mRNA downstream 620297 9083376 ~ 9087297 (-) False leap2
XM_036987258.1 mRNA downstream 630231 9023713 ~ 9077363 (-) False phka1a
XM_021614628.2 mRNA upstream 275685 9983492 ~ 9988450 (-) True LOC110531429
XR_005053162.1 mRNA upstream 409953 10117760 ~ 10130445 (-) False LOC118965989
XR_005053163.1 mRNA upstream 427722 10135529 ~ 10137709 (-) True LOC118965990
XM_036987277.1 mRNA upstream 432816 10140623 ~ 10213284 (-) False LOC110531425
XM_036987278.1 mRNA upstream 432816 10140623 ~ 10213284 (-) False LOC110531425
TU875757 other downstream 716888 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 716888 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1424270 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 1454839 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 1515696 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 666902 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 666902 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 1264566 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 1400021 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1920809 11628616 ~ 11629588 (-) True G771457

Expression Profile