RNA id: TU877178


Basic Information

Item Value
RNA id TU877178
length 2413
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G770035
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9868730 ~ 9871142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACATTAGAATTATattttaataataaataaatagcaGCATCACACGGAAATGAAATAAAAAACATTGTCGTGTGGATGACTAAAGTTGTAAAAACATGAGAAGTGTCATTGACGGATATTCACAAGTAAATGGTCTAAAAAAAATGCCGATTGATTTGATCGTAACGTAAGGGGGTTGACACATAAAAGATCTCTAACTCTGGCCCGGGGCATTATGCTGGTTTCACAACAAGTGGTAAACTCTGAAAACACTACTTGTAAAACTGGGAGCAACCAGTTTACAACCAGCAATGCGTTCACATGCTTTGAGCTAGTTAAGAACGCCAATCGGCTGATTGGCAAACAAGTTGTATCAACCGTAGACTAAAAGTACAGCCATCATGCTCGTCAACAAATTACAATGTTCAACAAACATATCCAGagattttttacatttgttaAATTAAATGATGCTTTGTTGTTGCATTTAGCTGCTGAAAATGCTGTTATGAAGGTCATTTCCTTAGTAGGTGACgtcagaggtcagcatgtgggagaagtcGTAGCTCAGGGATGATGGATGAGTTTCCCCACTGGTAATTACCAGTTAGAGGGCCGTTCAAACTGGATTTTTCCCAGTCGTATGCCCTTAGTTACGAATTTGAGAGATTTCACGAGCGCAGCGTTAGTTTGGCAACGCTGAGAAGAGGATGCTCtaatgccctggaccagagctctATCCTACACACACGGTTACGGATCACATATACAGCTTCAAATACATTGTTTAAGCAAACTGGTTTCGCAAACTGATTTCGGATCAAACCAAAACCCGATTCTTTCAGGGGGGTTTTCTCTCGGCGTCCTCTTCTCTCTGCACTCCTCTTTATTAGTTTTAGTTTCGTTTTTTTTGCTCAACTTCATGTCAAACGTGGCAAAGGGCCTGTAGTCCTATTGACCTCTGTCTTTTGTCTGGAAAAAACTCCAACGTTCCTAGTGATCGGTTAGGCCTATTGTTCCATCTTCCTTACTTAGGAGCTAGACAGTGtgcatcttaaatggcaccctattccctacatggggCACTACTTttatcagagccctatggtccctggtgaaaagtagtgcactatatagagaatagggtgccatttgagacgtagcCAAAGTGtgttaaaataaaacatttgacctGTGTGTGACCTGTGTAGAGGGGTCAGAGGTTGTCATAGGTAGTACATTCAGTCAGATGCTCTGGTGTTTTGGTTGTGGTTGTGGCAGCGTTGAGTATGAGTTGTAGGGATAACTTTCAGGGTGTATGTGGGTTATATAGGCCCATAGGGTTACTCATATAATGTAGATTGGGTTATGGTGAGGTTTGTTCTATGATAGGGTTATAGCCTATGCTTTTAGTTGAGTTTTGATCACAgctacaaatgtaggatcttaatttgagccagtttgacAGAGTAGGAAAACAATACTGCAGCAATagcaaatgtgaattattatatggattataattaatggacaattttttgtAAGAGTTAATCatttttttgttagggcaaatcgaatctggacattttaaagtggacattacaaactttagaagcattttttttaaaccttgagtACACAATAAGTTAGCATTTCCTGCCGAGCAGGAAAATGATCAGCAACAAAAAAggtgctcaaattaagatccggcATCTGTATGGTTGGGGTTATGTTCTGGTCAAGGCCTGGAGTTAGGCTGGCGGTGAGGGACCAAGACAATCCCTCTGAGACCTGTATCCAGAAAGACTCTCAGAGTGCTGATCATCCTTAACTGGACTGGGTTTGATCCGTCTTCTCAAGGACTGCCTGCCGTGGCCATCAGTATGAGGTAATACATTATGACGTGTGAGAGAGATCCATTGTACTGAGACCAGTGTTTCCAACCCCTTCATCCACCCTCATGTAAGCATTAAAATAAGTCAATCCTAAcctcagatctaggatcaggttaccCAACTCCCAACAATTTGACCCTGTATCAGTGGTCAGGGCCATTGACTTCTACCTACACAGTCTACTCATTTTAATGAGGTGGGTTCTTGGTGCTACCCCCTGTCTCACCACAAGGTGGCACTGTGACGGTCATTGGGGCTATAGTAACCTTTCTCCAGTCATCATTACCAGTCTCCCTAGTAACCATTATAGACTTGTTTTATACACACTGGAAAAAGCTCCATTCAGACCTGTTGTATTGTTATGtcgtgtccatggtgctgaatttTCACTAAGATCCATTACACAATAAGTTAGACTGCATTTGACTATGGAAGCATCTgacatggaaccctattccctatgtagtggatcaaacgtagtgcactgtgtagggaatagggtgccattcaggaCATAGACTATGAAGTCTCGAGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877175 lncRNA downstream 1914 9866462 ~ 9866816 (-) True G770033
TU877174 lncRNA downstream 2633 9865778 ~ 9866097 (-) True G770032
TU877173 lncRNA downstream 3347 9865128 ~ 9865383 (-) True G770031
TU877169 lncRNA downstream 14118 9854356 ~ 9854612 (-) True G770027
TU877168 lncRNA downstream 17036 9851429 ~ 9851694 (-) True G770026
TU877193 lncRNA upstream 25800 9896942 ~ 9897324 (-) True G770047
TU877209 lncRNA upstream 62332 9933474 ~ 9936056 (-) False G770063
TU877211 lncRNA upstream 62332 9933474 ~ 9938922 (-) True G770063
TU877214 lncRNA upstream 70046 9941188 ~ 9942957 (-) True G770065
TU877216 lncRNA upstream 73995 9945137 ~ 9945473 (-) True G770067
XM_036987268.1 mRNA downstream 520472 9294764 ~ 9348258 (-) True LOC110531417
XM_021614611.2 mRNA downstream 761271 9104234 ~ 9107459 (-) True bmp15
NM_001124464.1 mRNA downstream 781433 9083376 ~ 9087297 (-) False leap2
XM_036987258.1 mRNA downstream 791367 9023713 ~ 9077363 (-) False phka1a
XM_021614628.2 mRNA upstream 112350 9983492 ~ 9988450 (-) True LOC110531429
XR_005053162.1 mRNA upstream 246618 10117760 ~ 10130445 (-) False LOC118965989
XR_005053163.1 mRNA upstream 264387 10135529 ~ 10137709 (-) True LOC118965990
XM_036987277.1 mRNA upstream 269481 10140623 ~ 10213284 (-) False LOC110531425
XM_036987278.1 mRNA upstream 269481 10140623 ~ 10213284 (-) False LOC110531425
TU875757 other downstream 878024 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 878024 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1585406 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 1615975 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 1676832 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 503567 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 503567 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 1101231 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 1236686 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1757474 11628616 ~ 11629588 (-) True G771457

Expression Profile