RNA id: TU877171


Basic Information

Item Value
RNA id TU877171
length 2992
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G770029
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 9951244 ~ 9954280 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttgaagtagtagttccccttgctctgcaagggccgcggcttttgtggagcgaggggtgacgatgcttcgtgggtgactgttgttgatgtgtgcagagggtccctggtacgcccccgggtatgggcgaggggacggtctaaagttatactgttacactcatCAGAGCaatgaagacagacaggcaggctggaGATGTACCGTTACCTACAGCCTATGCTAGAAGCTAGACCATAATTCATAAACTCAGTGTTAGGCATAATACTGCAGTGAATTTATCCAGTCAATTTAcacagtgaaatatattttttttcttcagataGTGAAATCATAGTTAGCCAACACTATGTGCGCTCCCGAGGCTGCGCTGAGTGCGGTCCCTCCACGTCCGTGGGTAGCAGCTCTGAAAGCTATCCTATTGTTTTATAGGGACAAGAAATGTACCCTACCTAGGctataacaacacaatgtaatgAATTATGTTATTATTGTTTTCAAGTGCGTACAAAACTCTAGTCTAGGCTATAACTGCAGTGAATACCGTGTGTCATTTGAATAACCGCTCAAAAGCCTGGCGTTTTGAATACATATTAATTTGGAAATAACTCAAACTAACATGCCTGACTGGGCGACCATTTGGATCAGTTATGTGTTTTTAATGAGCAGTTTAGCCTACACGGTCCAGGCACATCAGCAGGACAGTAATACATGGGGTATTTTGTCATGATGTCTCCGCTAACAGAAACATACTAATGCAGGAATTTCTAGTGGCGCGCATATGAATTATGATAATGCGCAAGCGCGGAGAAAGATGTTGCCGTAGTTCCCGCGTTTGGCTTCATCTTTTAAAAGCGTTCGAAAATGAGGTGGACAACTCCCTATACAAACATTTAGTTAATCAATTTCACATTCACAGCTGTGCTTCTACAGTACACTGAAGTTTCTATtagatacagatctaggatcagcttacccacCCTCCAATCGTAACCTTAACTATTAGCGGGAAAACCATAAAACTGCTCTTAGATCATTGTCTAGGATTCAACTTCATCCCCAAACGAGCTGTATGTATACTTAGTTTAGATGTGCTATTAAATGGTGCAGTGTCCCTGTTTATTTGCTATCAGTGGCACATTGAAACAAAAATGCAAAATGAAGTATTTTCAGTGTCTTTCTCCATGTCTTTCTTCATTAGTTTAAAACCCAtacttgaaaaaaatattttttgatgtTACGATTATATCCTCTGCAAGTGTGGTCTCAATATAATTTTGCCCAGGGTGCAACATTATTTCAATCGGCTAAGGGGCCGCTTTTGGATCACGGGCCTGTAGTTTGAGACCCCTGCTCTACAAGCACTGAGCAAATACAGTAAGCATTGTGAGTAACGTTGGATGAAGTGATTTAGGCATCTGTGCATCTGTACAAAGCTACTTCACATAGTACACCACAAGCAGAGGCTTCAGTACAGAATAAAACTGGTCTAATATTGTGATTGAtgactacatttcccacaatacATTGTGCGCTGAAAACTTGCCCTTGAAAATAAGTCAACCCACCGCATCATACTCAAATCTCACTGACCCCCATACGGAGTAGTTGTTGCTCGATGTAAAACTATGTTGTGTTTTATttgatatatttatatatatagtgttttttTTATGATTCTCTTAAAACATCCATTTTAAAACATGAGGCGGTGAAACTGTAAAGCCATATTTAAAAAAGCACTGCACACTGGTATTGTCTTTTGTCAGTTGGGTTTTGTTTGGTTATGAGGttgtttttcttgttgttgtttacaaGTGGAGAAAAGGTGGGATCCTacatttttgttgtgtgtgtgtgtgtgtgtgtgtgtgatcctacGCAGTTTCACACAAATGTGGCATCTCAGGGACGCGTCACAGCACCGCCTCCCCAACACCCCCGCGCTCTGTGGTAAGAATCTACCGGAACCGCGTCTGTTTGAGTTCTAGATTTAGCATTGTTCAGGGCAACCAGCTGAACCTTCCGATAATTGGAGTTGGTTGCCATGGGTATATATTTCCATCTTTTTAGTCACAGTGTGCATTCCAAACGGTACCCTatcctctatatagtgcactactttagaccagagctctacgggcccaggtcaacagtagtgctctacgtagtgaatagggtgccattttggacccCGTAACTCTTCTCAGATGTACTCCTGTCTAGGTTATGTATGAGCCACGTGAAAGAAAGAATTGAGGGAATAACTTAATAAAAAACATATCACCCACCTTCTTGACACAAGCTGACTTGTGCTCCTCAACCAACCCCATTTAGTTTACCTCAGCAAGGTCATAGCCATGGCTTGTAGTGTTGTACTGCTCACTGCTAAGTACTGTAATATGTTTTGTAGTGTACTGCTCACTGCTAAGTACTGTAATATGTTTTGTAGTGTTGTACTGCTCACTGCTAAGTACTGTAATACTGGAGCGTAACATTGATGATTGAATGGTTGATTGACTGGCTAACTGAGtgattgggagggggggggggggggggggggggtgtattctATGGCCTCATTCTTCTCCCCCTTCAGTGTCCATAGATCTGACCGAAGCTAAAACATCATCATAATTGCCTATCCACCTACCAAGTCGTTTCAGATCTGTGAATACAggaaagaaagatagaaagagttTGAGACACAATTCTGTAGAGTGATATTGAGAcagaatttttttggggggggcactaAAATCCCTCCATACACTCCCGTCCTTCCAGACCAAACTAGACCCCATTTCCTCAAAATCCTAACCCCTTGACCTATGACCCCTCTCAGTCGGACCACTCCCCGTTGTCCTCCCCGCCGGAGTCAGACTCTGATTCGCTGTACTCGACAGCGATGCGACGTGAGAGAATGGTGGCCACGTCGTTTCCTACGGGCTCTCTCTTCGcttcctgctctctctgctcctgtACCTTCCTCAATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877218 lncRNA downstream 3477 9947037 ~ 9947767 (-) True G770069
TU877217 lncRNA downstream 5439 9945525 ~ 9945805 (-) True G770068
TU877216 lncRNA downstream 5771 9945137 ~ 9945473 (-) True G770067
TU877214 lncRNA downstream 8287 9941188 ~ 9942957 (-) True G770065
TU877211 lncRNA downstream 12322 9933474 ~ 9938922 (-) True G770063
TU877220 lncRNA upstream 2178 9956458 ~ 9956754 (-) True G770071
TU877225 lncRNA upstream 6967 9961247 ~ 9961470 (-) True G770076
TU877231 lncRNA upstream 13416 9967696 ~ 9967899 (-) True G770080
TU877233 lncRNA upstream 19930 9974210 ~ 9975108 (-) True G770082
TU877250 lncRNA upstream 65165 10019445 ~ 10019665 (-) True G770098
XM_036987268.1 mRNA downstream 602986 9294764 ~ 9348258 (-) True LOC110531417
XM_021614611.2 mRNA downstream 843785 9104234 ~ 9107459 (-) True bmp15
NM_001124464.1 mRNA downstream 863947 9083376 ~ 9087297 (-) False leap2
XM_036987258.1 mRNA downstream 873881 9023713 ~ 9077363 (-) False phka1a
XM_021614628.2 mRNA upstream 29212 9983492 ~ 9988450 (-) True LOC110531429
XR_005053162.1 mRNA upstream 163480 10117760 ~ 10130445 (-) False LOC118965989
XR_005053163.1 mRNA upstream 181249 10135529 ~ 10137709 (-) True LOC118965990
XM_036987277.1 mRNA upstream 186343 10140623 ~ 10213284 (-) False LOC110531425
XM_036987278.1 mRNA upstream 186343 10140623 ~ 10213284 (-) False LOC110531425
TU875757 other downstream 960538 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 960538 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1667920 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 1698489 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 1759346 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 420429 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 420429 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 1018093 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 1153548 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1674336 11628616 ~ 11629588 (-) True G771457

Expression Profile