RNA id: TU877347


Basic Information

Item Value
RNA id TU877347
length 654
lncRNA type intronic
GC content 0.43
exon number 2
gene id G770174
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10185229 ~ 10186424 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgccgcctctacactctaaccactaggctaccctgccgcctctacactctaaccactaggctaccctgctgcatGTGTCGGGTACAGAGATGTCGCAGTTATACAAAAATAATTTTACCCATATTATTGGAGACTGgatgagtccatgcaatttattatgtgatttCTTAAGCACATTGTTACTCTTGAACTTAttcaggcttgccataacaaaggggttgagtacgtattgactcaagacactTCAGCTTTGAGTCGTTTAATTTCTAAAAAtgttctacaaacaaaattccactttgacctcatgaggtattttgtgtaggtcagtgacaccATCTCAactgaatcccactttgtaacacaacaacacgtGGAAAAGTTaaaaggtgtgaatactttctgtctGCATTAAACCGATAGTCTTGTTTTCCggaaaatgtttttgcttttcaTGGACTAGAACAAACATTAATGTCGAgcccgactgactgactgactgacagactctcacacacacagactctcacacacacagactctcacacacacacagactctcacacacacacagactctcacacacacacagactctcacacacacacagactctcacacacacacagactctcacacacacacagactctcacac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877345 lncRNA downstream 3029 10181637 ~ 10182200 (-) True G770173
TU877277 lncRNA downstream 24889 10132997 ~ 10160340 (-) True G770115
TU877327 lncRNA downstream 54892 10116536 ~ 10130337 (-) True LOC118965989
TU877326 lncRNA downstream 65015 10116536 ~ 10120214 (-) False LOC118965989
TU877303 lncRNA downstream 84383 10100642 ~ 10100846 (-) True G770140
TU877358 lncRNA upstream 47692 10234116 ~ 10234358 (-) True G770183
TU877274 lncRNA upstream 51574 10237998 ~ 10238457 (-) True G770112
TU877272 lncRNA upstream 53416 10239840 ~ 10241076 (-) True G770110
TU877361 lncRNA upstream 56548 10242972 ~ 10243256 (-) True G770186
TU877362 lncRNA upstream 57347 10243771 ~ 10244137 (-) True G770187
XR_005053163.1 mRNA downstream 47520 10135529 ~ 10137709 (-) True LOC118965990
XR_005053162.1 mRNA downstream 54784 10117760 ~ 10130445 (-) False LOC118965989
XM_021614628.2 mRNA downstream 196779 9983492 ~ 9988450 (-) True LOC110531429
XM_036987268.1 mRNA downstream 836971 9294764 ~ 9348258 (-) True LOC110531417
XM_021614611.2 mRNA downstream 1077770 9104234 ~ 9107459 (-) True bmp15
XM_021614633.2 mRNA upstream 54801 10241225 ~ 10247265 (-) True LOC110531433
XM_021614635.2 mRNA upstream 75869 10262293 ~ 10273980 (-) True LOC110531436
XR_005053166.1 mRNA upstream 79373 10265797 ~ 10267533 (-) False LOC118965991
XR_005053170.1 mRNA upstream 79646 10266070 ~ 10267529 (-) False LOC118965991
XR_005053169.1 mRNA upstream 79646 10266070 ~ 10267533 (-) False LOC118965991
TU875757 other downstream 1194523 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1194523 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1901905 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 1932474 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 1993331 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 188285 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 188285 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 785949 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 921404 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1442192 11628616 ~ 11629588 (-) True G771457

Expression Profile