RNA id: TU877366


Basic Information

Item Value
RNA id TU877366
length 457
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G770191
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10260507 ~ 10260963 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgtgaccactatgTGCGTCATGCGTCACATGTCCTTCCCATAGAGTtgaccaggctgttgattgtgatctgtagaatgttgtcccactcatcttcaatggctgtgcgaagttgctggataatggcgggaactggaacacgctgtcatgcatgtcgatccagagcatcccaaacatgctcaatggatgaaATGTCTGGTgcgtatgcagaccatggaagaactgggacattttcaacttccaggaatcGTGTACAGATGTGTTGGCAGCGGATGAATAGCACGTCAATGGGAACAAATAAAATGCAATTCTGTTAaaaacacaacacatcagctgtatgtgaccaggcgaaaaaacctttccaagccaaaccactaACTTACACACAGCCTATGtcgtcaccatattagctaaagtaacgtcatagtccgTATAGCTACTAGAAGCAccgcgttagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877362 lncRNA downstream 16370 10243771 ~ 10244137 (-) True G770187
TU877361 lncRNA downstream 17251 10242972 ~ 10243256 (-) True G770186
TU877272 lncRNA downstream 19431 10239840 ~ 10241076 (-) True G770110
TU877274 lncRNA downstream 22050 10237998 ~ 10238457 (-) True G770112
TU877358 lncRNA downstream 26149 10234116 ~ 10234358 (-) True G770183
TU877378 lncRNA upstream 21464 10282427 ~ 10296371 (-) False G770200
TU877381 lncRNA upstream 21464 10282427 ~ 10283002 (-) True G770200
TU877392 lncRNA upstream 35901 10296864 ~ 10298349 (-) True G770211
TU877423 lncRNA upstream 67227 10328190 ~ 10328653 (-) True G770228
TU877426 lncRNA upstream 72082 10333045 ~ 10333412 (-) True G770231
XM_021614633.2 mRNA downstream 13242 10241225 ~ 10247265 (-) True LOC110531433
XM_036987276.1 mRNA downstream 47222 10140623 ~ 10213285 (-) False LOC110531425
XM_021614635.2 mRNA upstream 1330 10262293 ~ 10273980 (-) True LOC110531436
XR_005053166.1 mRNA upstream 4834 10265797 ~ 10267533 (-) False LOC118965991
XR_005053170.1 mRNA upstream 5107 10266070 ~ 10267529 (-) False LOC118965991
XR_005053169.1 mRNA upstream 5107 10266070 ~ 10267533 (-) False LOC118965991
XR_005053167.1 mRNA upstream 5107 10266070 ~ 10267534 (-) False LOC118965991
TU875757 other downstream 1269801 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1269801 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 1977183 8278817 ~ 8283324 (-) True LOC110531377
TU875271 other downstream 2007752 8221531 ~ 8252755 (-) True LOC118936684
TU875250 other downstream 2068609 8189443 ~ 8191898 (-) True G768390
TU877415 other upstream 113746 10374709 ~ 10375854 (-) False G770225
TU877419 other upstream 113746 10374709 ~ 10375854 (-) True G770225
TU877807 other upstream 711410 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 846865 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1367653 11628616 ~ 11629588 (-) True G771457

Expression Profile