RNA id: TU877488


Basic Information

Item Value
RNA id TU877488
length 636
lncRNA type intronic
GC content 0.44
exon number 2
gene id G770289
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10448776 ~ 10450607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ttcacactaccgacattaccatatcccctctattcacactactggcattaccatatcccctctattcacactaccggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccataacccctctattcacactaccgacattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccatatcccctctattcacactactggcattaccataacccctctattcacactactgacattaccatatcccctctattgaCACTACTGGCATTACcgtatcccctctattcacactaccggcattaccatatcccctctattcacactaccggcattaccatatcccctctattcacattACTGGCattaccatatcccctctattcacactaccggcattaccatatcccctctattcacactaccggcattaccatatcccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877413 lncRNA downstream 72922 10374709 ~ 10375854 (-) False G770225
TU877416 lncRNA downstream 72922 10374709 ~ 10375854 (-) False G770225
TU877406 lncRNA downstream 73655 10373787 ~ 10375121 (-) False G770225
TU877412 lncRNA downstream 76561 10369126 ~ 10372215 (-) False G770225
TU877409 lncRNA downstream 79373 10367459 ~ 10369403 (-) False G770225
TU877505 lncRNA upstream 73712 10524319 ~ 10525681 (-) True G770305
TU877506 lncRNA upstream 75172 10525779 ~ 10526854 (-) True G770306
TU877507 lncRNA upstream 76572 10527179 ~ 10527840 (-) True G770307
TU877503 lncRNA upstream 79271 10529878 ~ 10531905 (-) True G770304
TU877535 lncRNA upstream 82355 10532962 ~ 10533195 (-) True G770325
XM_021614635.2 mRNA downstream 174796 10262293 ~ 10273980 (-) True LOC110531436
XR_005053168.1 mRNA downstream 181073 10266070 ~ 10267703 (-) False LOC118965991
XR_005053164.1 mRNA downstream 181078 10266070 ~ 10267698 (-) False LOC118965991
XR_005053167.1 mRNA downstream 181242 10266070 ~ 10267534 (-) False LOC118965991
XR_005053166.1 mRNA downstream 181243 10265797 ~ 10267533 (-) False LOC118965991
XR_005053173.1 mRNA upstream 210783 10661390 ~ 10664564 (-) True LOC118965993
XM_036987296.1 mRNA upstream 221381 10671988 ~ 10695563 (-) True LOC110531427
XM_036987301.1 mRNA upstream 340586 10791193 ~ 10885360 (-) True LOC110531422
XM_036987318.1 mRNA upstream 1044935 11495542 ~ 11535435 (-) False LOC110531444
XM_036987315.1 mRNA upstream 1044935 11495542 ~ 11535436 (-) False LOC110531444
TU877415 other downstream 72922 10374709 ~ 10375854 (-) False G770225
TU877419 other downstream 72922 10374709 ~ 10375854 (-) True G770225
TU875757 other downstream 1458070 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1458070 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 2165452 8278817 ~ 8283324 (-) True LOC110531377
TU877807 other upstream 521766 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 657221 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1178009 11628616 ~ 11629588 (-) True G771457
TU878914 other upstream 1247792 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other upstream 1247792 11698399 ~ 11701583 (-) True LOC110531452

Expression Profile