RNA id: TU877505


Basic Information

Item Value
RNA id TU877505
length 1363
lncRNA type antisense_over
GC content 0.46
exon number 1
gene id G770305
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10524319 ~ 10525681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAGGAGTGGGGCTGCACtatgggcagagagagacagagcatgaATTCCAgctagggaggaggagaagagtagaaggaaggtaaaggagaggaaaaggctgcagtatcaccactgcacTACATggacagtgtgagagagaaagcgtGTCGCGAGGGCACAAAGAACTGGGTGATAGATCCTTATCCTTTTTTATTGTTCTCTATGTCAGATAGCTCTATTCTTGTTTTGTCTCTGTGAGTTTTGAGATAGTTGTTCGAACAGTGTGTTCTAATCTCATTTCTGGAATCCCCTCAGTTCTAGAATCCCCTCAGTTCTGGAATCTCCTCAGTTCTGGAATCCCCTCAGTTCTAGAATCCCCTCAGTTCTAGAATCCCCTCAGTTCTAGAATCCCCTCAGTTCTAGAATCCCCTCAGTTCTAGAATCCTCTCAGTTCTAGAATCCCCTCAGGTCCAGAATGTCTCCAAAGAGTACAGCCACGTTCAGACCACTTCATCCTCTCCTTAGGACGGATGAGTTAACCCCTtctctgcagacacacacacacatacagtagacacGCCCCAATGACCCTCCTCTAGTATAAACCCCCTGGGGGTTTTCTGGCGTTGCAGTCCAATGGTCCTAACAGAGACCTGTAGTCTAAACCTGTTTAATCAACCCAACTTGTATCAGACTCTCCCTTAGGAAAGATCCACAGGGATCCATTCTGTGTACACTTTCACTCATCCCTCCTGCATGCGTTTGGTTATCCTTtcctgcacgcacgcacacgtaaacacataaacacacacgctGACAGCAGTGTGGGGAGATCCATAGGGAAGGTTTGGGTGTGTGTACTACTGGGTGTGTGTACTACTGTTCACTGTTAGTCCTACAGTAATTATATTGTACTACCGTACTACTGCTGTTAGTAGGACTAGTATACATAGTCTCTTCAAACAGTTCAGGCTGTTCTATTTCAGGTTATACGGTGGGTATGCATATCGTTGTACAAGTTAAATATGTATGGCCTTCTATCTCGCAataaatgtttttaacataaaccAAACATAGAACACGGATGACACAGGCGTTGATGTGCCGTCGTTGTTGTGAACTAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTTGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTTGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACGAGTTCTGTATGCCGTCGTTGTTGTGAACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877488 lncRNA downstream 73712 10448776 ~ 10450607 (-) True G770289
TU877413 lncRNA downstream 148465 10374709 ~ 10375854 (-) False G770225
TU877416 lncRNA downstream 148465 10374709 ~ 10375854 (-) False G770225
TU877406 lncRNA downstream 149198 10373787 ~ 10375121 (-) False G770225
TU877412 lncRNA downstream 152104 10369126 ~ 10372215 (-) False G770225
TU877506 lncRNA upstream 98 10525779 ~ 10526854 (-) True G770306
TU877507 lncRNA upstream 1498 10527179 ~ 10527840 (-) True G770307
TU877503 lncRNA upstream 4197 10529878 ~ 10531905 (-) True G770304
TU877535 lncRNA upstream 7281 10532962 ~ 10533195 (-) True G770325
TU877571 lncRNA upstream 51951 10577632 ~ 10579758 (-) True G770354
XM_021614635.2 mRNA downstream 250339 10262293 ~ 10273980 (-) True LOC110531436
XR_005053168.1 mRNA downstream 256616 10266070 ~ 10267703 (-) False LOC118965991
XR_005053164.1 mRNA downstream 256621 10266070 ~ 10267698 (-) False LOC118965991
XR_005053167.1 mRNA downstream 256785 10266070 ~ 10267534 (-) False LOC118965991
XR_005053166.1 mRNA downstream 256786 10265797 ~ 10267533 (-) False LOC118965991
XR_005053173.1 mRNA upstream 135709 10661390 ~ 10664564 (-) True LOC118965993
XM_036987296.1 mRNA upstream 146307 10671988 ~ 10695563 (-) True LOC110531427
XM_036987301.1 mRNA upstream 265512 10791193 ~ 10885360 (-) True LOC110531422
XM_036987318.1 mRNA upstream 969861 11495542 ~ 11535435 (-) False LOC110531444
XM_036987315.1 mRNA upstream 969861 11495542 ~ 11535436 (-) False LOC110531444
TU877415 other downstream 148465 10374709 ~ 10375854 (-) False G770225
TU877419 other downstream 148465 10374709 ~ 10375854 (-) True G770225
TU875757 other downstream 1533613 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1533613 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 2240995 8278817 ~ 8283324 (-) True LOC110531377
TU877807 other upstream 446692 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 582147 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 1102935 11628616 ~ 11629588 (-) True G771457
TU878914 other upstream 1172718 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other upstream 1172718 11698399 ~ 11701583 (-) True LOC110531452

Expression Profile