RNA id: TU877722


Basic Information

Item Value
RNA id TU877722
length 511
lncRNA type intronic
GC content 0.39
exon number 2
gene id G770472
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 10811890 ~ 10812451 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

actactactactgctgctgctactactactactgctactactactactgctactactactactactactactactactactgctactactactactgctactactactactactgctgctactactactactgctacaaccactactgctgctactactactactactactgctactactactactactactactactactactactactgctactactactactactactactgctactactactgctactactactactactactactactactactactactactactgctactactactactactactactactactactactactactactgctactactactactactgctgctactactactactacaaccactactgctgctactactactactactactactactactgctgctactactactactgctactactactactactgctgctactactactactactactactactactactactactactgctactactacta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877710 lncRNA downstream 22595 10786897 ~ 10789295 (-) True G770463
TU877693 lncRNA downstream 32090 10777234 ~ 10779800 (-) True G770455
TU877692 lncRNA downstream 36257 10775269 ~ 10775633 (-) True G770454
TU877670 lncRNA downstream 39527 10772297 ~ 10772363 (-) True G770432
TU877681 lncRNA downstream 56399 10751089 ~ 10755491 (-) True G770443
TU877769 lncRNA upstream 101857 10914308 ~ 10914919 (-) True G770518
TU877776 lncRNA upstream 114688 10927139 ~ 10927374 (-) True G770525
TU877788 lncRNA upstream 132408 10944859 ~ 10945329 (-) True G770533
TU877865 lncRNA upstream 253730 11066181 ~ 11077661 (-) True G770601
TU877874 lncRNA upstream 266587 11079038 ~ 11079303 (-) True G770607
XM_036987296.1 mRNA downstream 116327 10671988 ~ 10695563 (-) True LOC110531427
XR_005053173.1 mRNA downstream 147326 10661390 ~ 10664564 (-) True LOC118965993
XR_005053168.1 mRNA downstream 544187 10266070 ~ 10267703 (-) False LOC118965991
XR_005053164.1 mRNA downstream 544192 10266070 ~ 10267698 (-) False LOC118965991
XM_036987318.1 mRNA upstream 683091 11495542 ~ 11535435 (-) False LOC110531444
XM_036987315.1 mRNA upstream 683091 11495542 ~ 11535436 (-) False LOC110531444
XM_036987316.1 mRNA upstream 683091 11495542 ~ 11535436 (-) False LOC110531444
XM_036987313.1 mRNA upstream 683091 11495542 ~ 11535437 (-) False LOC110531444
XM_036987317.1 mRNA upstream 683091 11495542 ~ 11535437 (-) False LOC110531444
TU877415 other downstream 436036 10374709 ~ 10375854 (-) False G770225
TU877419 other downstream 436036 10374709 ~ 10375854 (-) True G770225
TU875757 other downstream 1821184 8982468 ~ 8990706 (-) False G768780
TU875758 other downstream 1821184 8982468 ~ 8990706 (-) True G768780
TU875321 other downstream 2528566 8278817 ~ 8283324 (-) True LOC110531377
TU877807 other upstream 159922 10972373 ~ 10974413 (-) True G770549
TU877895 other upstream 295377 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 816165 11628616 ~ 11629588 (-) True G771457
TU878914 other upstream 885948 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other upstream 885948 11698399 ~ 11701583 (-) True LOC110531452

Expression Profile