RNA id: TU877883


Basic Information

Item Value
RNA id TU877883
length 461
lncRNA type intronic
GC content 0.36
exon number 1
gene id G770616
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11090320 ~ 11090780 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATACTAAATATATGGGGGacacaaccatcccagctctgcagattctgccaCGAGGAGAGAGAATCATTACAtgatttgttttggtactgtccaaatgtagcttgtttttggtcgcaggtttaggaatggctgaagaattgtaacatttacctggagctaacgctgcagatagcactgctgggtgatttgaaaagtcatagtcaatcgatcaataatataataatactcttagcaaaaatgtttatctttaatttacaatctttagaaactatgagaatagaaaggttcagaacttttgtgaaacatcacagcacagttgaaaaatatatggcaaatagaaatcaacactggatggtgttcagagatagatgggaggagttgagtggagctgaaggatgggactaaaaacaaaccaGAGATAACAATTGTAAAATAtgctgtgtctgtaaaatgtatatagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU877881 lncRNA downstream 2759 11087317 ~ 11087561 (-) True G770614
TU877880 lncRNA downstream 3028 11087053 ~ 11087292 (-) True G770613
TU877875 lncRNA downstream 8835 11081063 ~ 11081485 (-) True G770608
TU877874 lncRNA downstream 11017 11079038 ~ 11079303 (-) True G770607
TU877865 lncRNA downstream 12659 11066181 ~ 11077661 (-) True G770601
TU877886 lncRNA upstream 5159 11095939 ~ 11096243 (-) True G770619
TU877889 lncRNA upstream 9976 11100756 ~ 11101180 (-) True G770621
TU877891 lncRNA upstream 12175 11102955 ~ 11103237 (-) True G770623
TU877892 lncRNA upstream 14198 11104978 ~ 11105246 (-) True G770624
TU877899 lncRNA upstream 17724 11108504 ~ 11109924 (-) True G770629
XM_036987301.1 mRNA downstream 204960 10791193 ~ 10885360 (-) True LOC110531422
XM_036987296.1 mRNA downstream 394757 10671988 ~ 10695563 (-) True LOC110531427
XR_005053173.1 mRNA downstream 425756 10661390 ~ 10664564 (-) True LOC118965993
XR_005053168.1 mRNA downstream 822617 10266070 ~ 10267703 (-) False LOC118965991
XM_036987318.1 mRNA upstream 404762 11495542 ~ 11535435 (-) False LOC110531444
XM_036987315.1 mRNA upstream 404762 11495542 ~ 11535436 (-) False LOC110531444
XM_036987316.1 mRNA upstream 404762 11495542 ~ 11535436 (-) False LOC110531444
XM_036987313.1 mRNA upstream 404762 11495542 ~ 11535437 (-) False LOC110531444
XM_036987317.1 mRNA upstream 404762 11495542 ~ 11535437 (-) False LOC110531444
TU877807 other downstream 115907 10972373 ~ 10974413 (-) True G770549
TU877415 other downstream 714466 10374709 ~ 10375854 (-) False G770225
TU877419 other downstream 714466 10374709 ~ 10375854 (-) True G770225
TU875757 other downstream 2099614 8982468 ~ 8990706 (-) False G768780
TU877895 other upstream 17048 11107828 ~ 11108159 (-) True G770627
TU878909 other upstream 537836 11628616 ~ 11629588 (-) True G771457
TU878914 other upstream 607619 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other upstream 607619 11698399 ~ 11701583 (-) True LOC110531452
TU878944 other upstream 668458 11759238 ~ 11776612 (-) False LOC110532912

Expression Profile