RNA id: TU879010


Basic Information

Item Value
RNA id TU879010
length 902
lncRNA type inter_gene
GC content 0.46
exon number 3
gene id G771540
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11870589 ~ 11916867 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTCAGCTGGAATTGTTGACATTtctaacgttgttgtgtgatctTCAAGGGTCGTTCCCGCTGCAGTTGTGGAGTCAGTTTGCTCTGCAGTTGTACTTTCAGATCCTTGGGTAGATGAGAGTCCAACGGTAGTGGAAGATATTTGCCCGCCTGTGACTGCTGAAGTTAGTTCATTTGTATTGGCAGGCTCACTGGTAATCGTAGAATGTTGTGAGGGACTTGTTTCCGTTGAGGTACTGGTTGAAGTTTCTGTTACACTTGATGACATAGCTGTAGTTGTTTCCATTGTGTCTTTGGTTGATGCTGGTGTCATGGTCACTCCCGATGTTGAAAACGTAGCTTCCACAGCTGCACTTGTTAAACCAGCTGAGGTCGCTGTCGATTCTTCAGCAGATGTGTTTGCTTCAGAAGTTGTTGTTGATGCCTCACTTGATGTTGAGGTACCAGCAGTGCTAGTTAGAGACTCACTTGTAACGTCAGAGGGCACTGTTGTGTGACCAGTAGTGATTGTGGGAGATGGGCTTGTCACAGTATCTGGGCTAGCTGATGGTTCTTGTGTAACAATGGTAGTTGTTTCAGCTGGAATTGTTGACATTtctaacgttgttgtgtgatctTCAAGGGTCGTTCCCGCTGCAGTTGTGGAGTCAGTTGGCTCTGCAGTTGTACTTTCAGATCCCTGGGTAGATGAGAGTCCAACGGTAGTGGAAGATATTTGCCCGCCCGTGACTGCTGAAGTTAGTTCATTTGTAGTGGCAGGCTCACTGGTAATCGTAGAATGTTGTGAGGGACTTGTTTCCGTCGAGGTACTGGTTGAAGTTTCTGTTACACTTGATGACATAGCTGTAGTTGTTTCCATTGTGTCTTCGGTTGATGCTGGTGTCATGGTCACTCCCGATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU878982 lncRNA downstream 96603 11773219 ~ 11773986 (-) True G771517
TU878979 lncRNA downstream 114927 11755413 ~ 11755662 (-) True G771514
TU878977 lncRNA downstream 117847 11751763 ~ 11752742 (-) True G771512
TU878966 lncRNA downstream 147382 11722993 ~ 11723207 (-) True G771501
TU878965 lncRNA downstream 148822 11721524 ~ 11721767 (-) True G771500
TU879042 lncRNA upstream 937 11876417 ~ 11883893 (-) False G771566
TU879037 lncRNA upstream 2548 11878028 ~ 11880155 (-) False G771566
TU879049 lncRNA upstream 3421 11878901 ~ 11881125 (-) True G771567
TU879039 lncRNA upstream 5751 11881231 ~ 11925499 (-) False G771566
TU879040 lncRNA upstream 5751 11881231 ~ 11925499 (-) False G771566
XM_036987330.1 mRNA downstream 81824 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 120362 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 168976 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 209756 11658664 ~ 11660833 (-) True LOC110531450
XM_036987314.1 mRNA downstream 335150 11495542 ~ 11535439 (-) True LOC110531444
trnal-aag mRNA upstream 94689 11970169 ~ 11970250 (-) True trnal-aag
XM_021614675.2 mRNA upstream 250747 12126227 ~ 12144785 (-) False LOC110531465
XM_036987357.1 mRNA upstream 250747 12126227 ~ 12144786 (-) False LOC110531465
XM_036987352.1 mRNA upstream 272014 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 272014 12147494 ~ 12153015 (-) True LOC110531459
TU878946 other downstream 82020 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 93977 11759238 ~ 11776612 (-) False LOC110532912
TU878914 other downstream 169006 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other downstream 169006 11698399 ~ 11701583 (-) True LOC110531452
TU878909 other downstream 241001 11628616 ~ 11629588 (-) True G771457
TU879101 other upstream 95424 11970904 ~ 11971354 (-) True G771614
TU880578 other upstream 1118789 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 1118789 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1714773 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1821699 13697179 ~ 13699328 (-) True G773168

Expression Profile