RNA id: TU879039


Basic Information

Item Value
RNA id TU879039
length 2331
lncRNA type read_through
GC content 0.46
exon number 4
gene id G771566
representative False

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11876417 ~ 11925499 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGGTCATGTGATCACTCACCCACAGTCACAATTATCGGAGGTCCAGTTGTTGAGAGTGAAGTTGACGTCAATGAAGCAGATGCAGTTGTAGAAGTTGGACTGGATGCAGTAGAAGGGTTAGTTGGGGTAGTTGAAGTAGGTGTAGTAGAAGGGGTAGGTGTATTAGAAGGGGTAGTTGGGATAGGTGTAGTAGAAGGGATAGTTGGGGTAGGTGTAGTAGAACGGGTAGGTGTATTAGAAGGGGTAGTTGGGATAGGTGTAGTATAAGGGGTAGTTGGGGTAGGTGTTGTAGTTAGGTTAGGTGTAGTAGAAGGGGTAGTAGAAGGGGTAGTTGGGATAGGTGTAGTAGAAGGGGCAGTTGGGATAGATGTAGTAGAATGTGTAGTTGATGTAGTTAGGGTAGTTGGAGAAGGTGTGGTAGGTATAGTTGATGTAGTTAATGTAGTTGGAGGTGTGGTAGGTGCGGTAGTTGATGTAATTAGGGTGGTTGTAGAAGGTGTGGTAGGTGGGGTAGTTGATGTAGTTGATGGTGTGTTGGGTGTGGTTGTGAAAGGTAATGTAGTTTGAGTAGTTAGAAAGGGTGTGGTAGATGTGGGAGTTGGAGACTGTGTTGTGGTTATTGCTTCTATTGTTGGGCTAGTTGATGGTCCTTGTGTAATAATGGTTGTTGTTTCAGCTGGAATTGTTGTCATTtctaacgttgttgtgtgatctTCAAGGGTCGTTCCCACTGCAGTTGTGGAGTCAGTTGACTCTGCAGTTGTACTTTCAGTTCCCTGGGTAGATGAGAGTCCAACGGTAGTGGAAGATTTTTGCCCGTCCGTGACTGCTGAAGTTAGTTCATTTGTAGTGGCAGGCTCACTGGTAATCGTAGAAGATTGTGAGGGACTTGTTTCCGGGGAGGTACTGGTTGAAGTTTCTGTTTCACTTGATGACATAGCTATAGTTGTTTCCATTGTGTCTTTGGTTGATGCTGGTGTCATGGTCACTCCCGATGTTGAAAACGTAGCTTCCACAGTTGCACTTGTTAAACCAGCTGAGGTCGCTGTCGATTGTTCAGCAGATGTGTTTGCTTCAGAAGTTGTTGATGCCTCACCTGATGTTGAGGCACCAGCAGTGCTAGTTAGAGACTCACTTGTAACGTCAGAGGGCACTGTTGTGTGACCAGAAGTGATTGTGGGAGATGGGCTTGTCACAGTCTCTGGGCTAGCTGGTGGTTCTTGTGTAACAATCGTCGTTGTTTCAGCTGGAATTGTTGTTATTTCTAAAGTTGTTGTGTGATGTTCAAGGGTCGTTCCCGCTGCAGTTGTGGAGTCAGTTGGCTCTGCAGTTGTACTTTCAGATCCCTGGGTAGATGAGAGTCCAACGGTAGTGGAAGATATTTGCCCGTCCGTGACTGCTGAAGTTAGTTCATTTGTAGTGGCAGGCTCACTGGTAATCGTAGAATGTTGTGAGGGACTTGTTTCCGTCGAGGTACTGGTTGAAGTTTCTGTTACACTTGATGACATAGCTATAGTTGTTTCCATTGTGTCTTCGGTTGATGCTGGTGTCATGGTCACTCCCGATGTTGAAAACGTAGCTTCCACAGTTGCACTTGTTAAACCAGCTGAAGTCGCTGTCGATTGTTCAGCAGATGTGTTTGCTTCAGAAGTTGTTGATGCCTCACCTGATGTTGAGGCACCAGCAGTGCTAGTTAGAGACTCACTTGTAACATCAGAGGGCACTGTTGTGTGACCAGTAGTGCTTGTGGGAGATGGGCTTGTCACAGTATCTGGGCTAGCTGATGGTTCTTGTGTAACAATGGTAGTTGTTTCAGCTGGAATTGTTGACATTtctaacgttgttgtgtgatctTCAAGGGTCGTTCCCGCTGCAGTTGTGGAGTCAGTTTGCTCTGCAGTTGTACTTTCAGATCCTTGGGTAGATGAGAGTCCAACGGTAGTGGAAGATATTTGCCCGTCCGTGACTGCTGAAGTTAGTTCATTTGTAGTGGCAGGCTCACTGGTAATCGTAGAATGTTGTGAGGGACTTGTTTCCGTCGAGGTACTGGTTGAAGTTTCTGTTTCACTTGATGACATAGCTATAGTTGTTTCCATTGTGTCTTTGGTTGATGCTGGTGTCATGGTCACTCCCGATGTTGAAAACGTAGCTTCCACAGTTGCACTTGTTAAACCAGCTGAAGTCGCTGTCGATTGTTCAGCAGATGTGTTTGCTTCAGAAGTTGTTGATGCCTCACctgatgttgaggtaccagcAGTGCTAGTTAGAGACTCACTTGTAACGTCAGAGGGCACTGTTGTGTGACCAGTAGTGATTGTGGGAGATGGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879049 lncRNA downstream 106 11878901 ~ 11881125 (-) True G771567
TU879037 lncRNA downstream 1076 11878028 ~ 11880155 (-) False G771566
TU879010 lncRNA downstream 5751 11870589 ~ 11875480 (-) False G771540
TU878982 lncRNA downstream 107245 11773219 ~ 11773986 (-) True G771517
TU878979 lncRNA downstream 125569 11755413 ~ 11755662 (-) True G771514
TU879061 lncRNA upstream 6349 11931848 ~ 11933000 (-) True G771578
TU879077 lncRNA upstream 9434 11934933 ~ 11935714 (-) True G771594
TU879078 lncRNA upstream 11247 11936746 ~ 11937005 (-) True G771595
TU879080 lncRNA upstream 14147 11939646 ~ 11939899 (-) True G771597
TU879081 lncRNA upstream 15663 11941162 ~ 11941430 (-) True G771598
XM_036987330.1 mRNA downstream 92466 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 131004 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 179618 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 220398 11658664 ~ 11660833 (-) True LOC110531450
XM_036987314.1 mRNA downstream 345792 11495542 ~ 11535439 (-) True LOC110531444
trnal-aag mRNA upstream 44670 11970169 ~ 11970250 (-) True trnal-aag
XM_021614675.2 mRNA upstream 200728 12126227 ~ 12144785 (-) False LOC110531465
XM_036987357.1 mRNA upstream 200728 12126227 ~ 12144786 (-) False LOC110531465
XM_036987352.1 mRNA upstream 221995 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 221995 12147494 ~ 12153015 (-) True LOC110531459
TU878946 other downstream 92662 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 104619 11759238 ~ 11776612 (-) False LOC110532912
TU878914 other downstream 179648 11698399 ~ 11701583 (-) False LOC110531452
TU878915 other downstream 179648 11698399 ~ 11701583 (-) True LOC110531452
TU878909 other downstream 251643 11628616 ~ 11629588 (-) True G771457
TU879101 other upstream 45405 11970904 ~ 11971354 (-) True G771614
TU880578 other upstream 1068770 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 1068770 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1664754 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1771680 13697179 ~ 13699328 (-) True G773168

Expression Profile