RNA id: TU879083


Basic Information

Item Value
RNA id TU879083
length 477
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G771600
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 11942774 ~ 11943250 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CattactatttttatttgttcAAGATATAAGACCTTTCCTGTGACTGGAATGATAATTGGATCATTTATTTCAGCATGTCCATGCAAAGTCGTGACAAAAAAAGAAAGGAAGAAGTTAGCCGCTCTATTGCTAATCAACAAGAGAGAAACGTGCTTATAGACAACTGCAATGACTACGCTTCGCCTATGGATAATATCATGCTTTCGAATGCTGAAGATGACGAATTCCCCTCTTTACCGGTTACTCCGTGCAAACCTCCACCCTCCAAATAACCCAACATGAACTCTGACATCGTGGCTAACCTCCTTACTCATCAACTCCAGGTGTGACGCCTTTGAGAAAATGGTAGGCGCGAACACCATGGTTATCGAAGGCTTGAAACAGACTGTGGAGTTTGCATGTGGTGAAATTAAGGATGTGAAAACGAGAGTGGCAAAAGTTGAAAAAAATGTGGAAAGGGTGGAGAAGAATAACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879082 lncRNA downstream 894 11941681 ~ 11941880 (-) True G771599
TU879081 lncRNA downstream 1344 11941162 ~ 11941430 (-) True G771598
TU879080 lncRNA downstream 2875 11939646 ~ 11939899 (-) True G771597
TU879078 lncRNA downstream 5769 11936746 ~ 11937005 (-) True G771595
TU879077 lncRNA downstream 7060 11934933 ~ 11935714 (-) True G771594
TU879084 lncRNA upstream 838 11944088 ~ 11944332 (-) True G771601
TU879085 lncRNA upstream 2046 11945296 ~ 11946601 (-) True G771602
TU879086 lncRNA upstream 4761 11948011 ~ 11949292 (-) True G771603
TU879093 lncRNA upstream 11402 11954652 ~ 11962553 (-) True G771608
TU879100 lncRNA upstream 26353 11969603 ~ 11970011 (-) True G771613
XM_036987330.1 mRNA downstream 154009 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 192547 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 241161 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 281941 11658664 ~ 11660833 (-) True LOC110531450
XM_036987314.1 mRNA downstream 407335 11495542 ~ 11535439 (-) True LOC110531444
trnal-aag mRNA upstream 26919 11970169 ~ 11970250 (-) True trnal-aag
XM_021614675.2 mRNA upstream 182977 12126227 ~ 12144785 (-) False LOC110531465
XM_036987357.1 mRNA upstream 182977 12126227 ~ 12144786 (-) False LOC110531465
XM_036987352.1 mRNA upstream 204244 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 204244 12147494 ~ 12153015 (-) True LOC110531459
TU879007 other downstream 54059 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 154205 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 166162 11759238 ~ 11776612 (-) False LOC110532912
TU878914 other downstream 241191 11698399 ~ 11701583 (-) False LOC110531452
TU879101 other upstream 27654 11970904 ~ 11971354 (-) True G771614
TU880578 other upstream 1051019 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 1051019 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1647003 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1753929 13697179 ~ 13699328 (-) True G773168

Expression Profile