RNA id: TU879146


Basic Information

Item Value
RNA id TU879146
length 558
lncRNA type inter_gene
GC content 0.47
exon number 1
gene id G771654
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12045587 ~ 12046144 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGAAAACCCCTTCAACCATCCTTTCCCAGCCATCCACTTCATTTATTGCTTCTCCTCCCCCTGTTATGCCTCTcgtcacccctctctctgttcaagCACtagcacacaggcacacaggcacacacacacacaaccttatcCCCCATTTTGACCTCTGTTATCCACAATGGACCAGCCGACCAGTGACCAACGAATTAGTTCAACCCAAATGcatttcaacacacacacacacacacacatgccaacaTGCATGTACAAGACGGATGAATTACAAGACAAGGGTAAAGAACTACATGTTATTCTCATTATTACATCATTAGAAACTCTTTGATCTGAGTTCTGTTCCTTTCTGTTCTTTTCAACCTCCTTCtcttccatctccatctctcgttCCCCCGCTCCTCTACCTCTTATTCTTTCTCTATCttccactccatccctctctcccactccctcttttctctgtctgcctctctccatcccactctacccccctctcttctttctctccatccctctctcccactccctattttctctgtctgcctctctctgtcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879138 lncRNA downstream 6672 12037033 ~ 12038915 (-) False G771649
TU879141 lncRNA downstream 6672 12037033 ~ 12038915 (-) True G771649
TU879136 lncRNA downstream 9637 12035542 ~ 12035950 (-) True G771647
TU879135 lncRNA downstream 10120 12035195 ~ 12035467 (-) True G771646
TU879134 lncRNA downstream 10489 12034856 ~ 12035098 (-) True G771645
TU879152 lncRNA upstream 2468 12048612 ~ 12051262 (-) False G771656
TU879150 lncRNA upstream 9825 12055969 ~ 12057878 (-) True G771656
TU879163 lncRNA upstream 24090 12070234 ~ 12070451 (-) True G771664
TU879166 lncRNA upstream 26012 12072156 ~ 12072444 (-) True G771667
TU879167 lncRNA upstream 26736 12072880 ~ 12073455 (-) True G771668
trnal-aag mRNA downstream 75337 11970169 ~ 11970250 (-) True trnal-aag
XM_036987330.1 mRNA downstream 256822 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 295360 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 343974 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 384754 11658664 ~ 11660833 (-) True LOC110531450
XM_021614675.2 mRNA upstream 80083 12126227 ~ 12144785 (-) False LOC110531465
XM_036987357.1 mRNA upstream 80083 12126227 ~ 12144786 (-) False LOC110531465
XM_036987352.1 mRNA upstream 101350 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 101350 12147494 ~ 12153015 (-) True LOC110531459
trnas-uga-2 mRNA upstream 139488 12185632 ~ 12185713 (-) False trnas-uga-2
TU879101 other downstream 74233 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 156872 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 257018 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 268975 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 344004 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 948125 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 948125 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1544109 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1651035 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1934184 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile