RNA id: TU879167


Basic Information

Item Value
RNA id TU879167
length 576
lncRNA type inter_gene
GC content 0.51
exon number 1
gene id G771668
representative True

Chromosome Information

Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12072880 ~ 12073455 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tctctctctctctctctctctctctctctctctcgctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctctgtctctctctctctctctctctctccctctctctctctctgtctctctctctctctctctctctctctctctgtctctctgtctctctctctctctctctctctctctctctctgtctctctctctctctctctctccctatctctctctctgtctctctctctctctctctccctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctctctctgtctctctccctctctctctctctctctctctctctctctctctctctctctctctctctctctctctctgtctctctccctctctctctctctctctctctctctctgtctctctctctctctctctctctctctctctctctctctctctctgtctctctccctctctctctctctctctctctctgtctctctctctctgtctctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU879166 lncRNA downstream 436 12072156 ~ 12072444 (-) True G771667
TU879163 lncRNA downstream 2429 12070234 ~ 12070451 (-) True G771664
TU879150 lncRNA downstream 15002 12055969 ~ 12057878 (-) True G771656
TU879152 lncRNA downstream 21618 12048612 ~ 12051262 (-) False G771656
TU879146 lncRNA downstream 26736 12045587 ~ 12046144 (-) True G771654
TU879171 lncRNA upstream 2638 12076093 ~ 12076394 (-) True G771672
TU879174 lncRNA upstream 6908 12080363 ~ 12080573 (-) True G771675
TU879177 lncRNA upstream 12513 12085968 ~ 12086265 (-) True G771678
TU879178 lncRNA upstream 15004 12088459 ~ 12088779 (-) True G771679
TU879159 lncRNA upstream 18690 12092145 ~ 12128370 (-) False LOC110531465
trnal-aag mRNA downstream 102630 11970169 ~ 11970250 (-) True trnal-aag
XM_036987330.1 mRNA downstream 284115 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 322653 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 371267 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 412047 11658664 ~ 11660833 (-) True LOC110531450
XM_021614675.2 mRNA upstream 52772 12126227 ~ 12144785 (-) False LOC110531465
XM_036987357.1 mRNA upstream 52772 12126227 ~ 12144786 (-) False LOC110531465
XM_036987352.1 mRNA upstream 74039 12147494 ~ 12153010 (-) False LOC110531459
XM_021614669.2 mRNA upstream 74039 12147494 ~ 12153015 (-) True LOC110531459
trnas-uga-2 mRNA upstream 112177 12185632 ~ 12185713 (-) False trnas-uga-2
TU879101 other downstream 101526 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 184165 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 284311 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 296268 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 371297 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 920814 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 920814 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1516798 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1623724 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1906873 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile