RNA id: TU879200



Basic Information


Item Value
RNA id TU879200
length 241
lncRNA type read_through
GC content 0.36
exon number 2
gene id G771697
representative True

Chromosome Information


Item Value
chromosome id NC_048573.1
NCBI id CM023227.2
chromosome length 79455637
location 12138383 ~ 12172572 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


tCGGCGAGTGGAgaaaatacaattagatttgataaaatgttatttgatttagaAGGAGGAGGTTTTTGGCTGAAGGTGGGGAGTTTTTTTCTTGTCAGTAAGTTACTGTTATGTGAATATTGTAGCTGTTACCGAATAAGAGTCTGGGAGAAAATTATAGCAGCACACTAAAGCAGCTTTTGGGAATTTTCATCTGGTCGTAAAAGGCGTATCATAACAGTAGAAGTGtggagtttttttt

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU879159 lncRNA downstream 10013 12092145 ~ 12128370 (-) False LOC110531465
TU879160 lncRNA downstream 10013 12092145 ~ 12128370 (-) True LOC110531465
TU879178 lncRNA downstream 49604 12088459 ~ 12088779 (-) True G771679
TU879177 lncRNA downstream 52118 12085968 ~ 12086265 (-) True G771678
TU879174 lncRNA downstream 57810 12080363 ~ 12080573 (-) True G771675
TU879228 lncRNA upstream 12914 12185486 ~ 12185735 (-) True trnas-uga-2
TU879230 lncRNA upstream 14508 12187080 ~ 12187426 (-) True G771725
TU879231 lncRNA upstream 15099 12187671 ~ 12187909 (-) True G771726
TU879232 lncRNA upstream 15669 12188241 ~ 12188777 (-) True G771727
TU879233 lncRNA upstream 19066 12191638 ~ 12191994 (-) True G771728
trnal-aag mRNA downstream 168133 11970169 ~ 11970250 (-) True trnal-aag
XM_036987330.1 mRNA downstream 349618 11759145 ~ 11788765 (-) False LOC110532912
XM_036987329.1 mRNA downstream 388156 11741911 ~ 11750227 (-) True LOC110531453
XM_021614661.2 mRNA downstream 436770 11698392 ~ 11701613 (-) False LOC110531452
XM_021614655.2 mRNA downstream 477550 11658664 ~ 11660833 (-) True LOC110531450
trnas-uga-2 mRNA upstream 13060 12185632 ~ 12185713 (-) False trnas-uga-2
trnaw-cca-4 mRNA upstream 26135 12198707 ~ 12198778 (-) True trnaw-cca-4
XM_021614680.2 mRNA upstream 263768 12436340 ~ 12441768 (-) True sox19b
XM_021614681.2 mRNA upstream 296233 12468805 ~ 12479392 (-) True LOC110531476
XR_005053463.1 mRNA upstream 298404 12470976 ~ 12471118 (-) True LOC118966197
TU879101 other downstream 167029 11970904 ~ 11971354 (-) True G771614
TU879007 other downstream 249668 11871488 ~ 11888715 (-) True G771540
TU878946 other downstream 349814 11785781 ~ 11788569 (-) True LOC110532912
TU878944 other downstream 361771 11759238 ~ 11776612 (-) False LOC110532912
TU878915 other downstream 436800 11698399 ~ 11701583 (-) True LOC110531452
TU880578 other upstream 821697 12994269 ~ 12996410 (-) False G772877
TU880579 other upstream 821697 12994269 ~ 12996410 (-) True G772877
TU880902 other upstream 1417681 13590253 ~ 13592088 (-) True G773163
TU880908 other upstream 1524607 13697179 ~ 13699328 (-) True G773168
TU881137 other upstream 1807756 13980328 ~ 13987582 (-) True LOC110531538

Expression Profile